Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05446

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05444 and H281DRAFT_05445 are separated by 69 nucleotidesH281DRAFT_05445 and H281DRAFT_05446 are separated by 236 nucleotidesH281DRAFT_05446 and H281DRAFT_05447 are separated by 386 nucleotides H281DRAFT_05444: H281DRAFT_05444 - 4-carboxymuconolactone decarboxylase, at 23,851 to 24,411 _05444 H281DRAFT_05445: H281DRAFT_05445 - protein of unknown function (DUF4440), at 24,481 to 24,828 _05445 H281DRAFT_05446: H281DRAFT_05446 - Nitrate/nitrite transporter NarK, at 25,065 to 26,423 _05446 H281DRAFT_05447: H281DRAFT_05447 - hypothetical protein, at 26,810 to 27,532 _05447 Position (kb) 25 26 27Strain fitness (log2 ratio) -1 0 1 2at 24.540 kb on + strand, within H281DRAFT_05445at 24.613 kb on + strand, within H281DRAFT_05445at 25.483 kb on - strand, within H281DRAFT_05446at 25.690 kb on - strand, within H281DRAFT_05446at 25.822 kb on - strand, within H281DRAFT_05446at 25.828 kb on - strand, within H281DRAFT_05446at 25.860 kb on - strand, within H281DRAFT_05446at 26.187 kb on - strand, within H281DRAFT_05446at 26.218 kb on + strand, within H281DRAFT_05446at 26.254 kb on - strand, within H281DRAFT_05446at 26.254 kb on - strand, within H281DRAFT_05446at 26.523 kb on + strandat 27.331 kb on + strand, within H281DRAFT_05447

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
remove
24,540 + H281DRAFT_05445 0.17 +0.2
24,613 + H281DRAFT_05445 0.38 +1.4
25,483 - H281DRAFT_05446 0.31 +0.0
25,690 - H281DRAFT_05446 0.46 +1.0
25,822 - H281DRAFT_05446 0.56 +0.5
25,828 - H281DRAFT_05446 0.56 +0.4
25,860 - H281DRAFT_05446 0.58 +1.0
26,187 - H281DRAFT_05446 0.83 -0.6
26,218 + H281DRAFT_05446 0.85 +0.5
26,254 - H281DRAFT_05446 0.87 +0.3
26,254 - H281DRAFT_05446 0.87 +0.1
26,523 + -1.3
27,331 + H281DRAFT_05447 0.72 +1.8

Or see this region's nucleotide sequence