Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05279

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05277 and H281DRAFT_05278 overlap by 1 nucleotidesH281DRAFT_05278 and H281DRAFT_05279 overlap by 4 nucleotidesH281DRAFT_05279 and H281DRAFT_05280 overlap by 4 nucleotidesH281DRAFT_05280 and H281DRAFT_05281 are separated by 5 nucleotides H281DRAFT_05277: H281DRAFT_05277 - phosphoribosyl-dephospho-CoA transferase, at 19,923 to 20,630 _05277 H281DRAFT_05278: H281DRAFT_05278 - malonate decarboxylase gamma subunit, at 20,630 to 21,445 _05278 H281DRAFT_05279: H281DRAFT_05279 - malonate decarboxylase beta subunit, at 21,442 to 22,329 _05279 H281DRAFT_05280: H281DRAFT_05280 - malonate decarboxylase delta subunit, at 22,326 to 22,640 _05280 H281DRAFT_05281: H281DRAFT_05281 - triphosphoribosyl-dephospho-CoA synthase, at 22,646 to 23,608 _05281 Position (kb) 21 22 23Strain fitness (log2 ratio) -1 0 1at 20.778 kb on - strand, within H281DRAFT_05278at 21.021 kb on - strand, within H281DRAFT_05278at 21.093 kb on + strand, within H281DRAFT_05278at 21.093 kb on + strand, within H281DRAFT_05278at 21.094 kb on - strand, within H281DRAFT_05278at 21.489 kb on - strandat 21.771 kb on + strand, within H281DRAFT_05279at 23.029 kb on - strand, within H281DRAFT_05281

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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20,778 - H281DRAFT_05278 0.18 -0.5
21,021 - H281DRAFT_05278 0.48 -0.3
21,093 + H281DRAFT_05278 0.57 +0.3
21,093 + H281DRAFT_05278 0.57 +0.3
21,094 - H281DRAFT_05278 0.57 -0.8
21,489 - +0.0
21,771 + H281DRAFT_05279 0.37 -0.4
23,029 - H281DRAFT_05281 0.40 -1.0

Or see this region's nucleotide sequence