Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05231

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05230 and H281DRAFT_05231 are separated by 426 nucleotidesH281DRAFT_05231 and H281DRAFT_05232 are separated by 902 nucleotides H281DRAFT_05230: H281DRAFT_05230 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 192,936 to 194,750 _05230 H281DRAFT_05231: H281DRAFT_05231 - 2-keto-4-pentenoate hydratase, at 195,177 to 195,938 _05231 H281DRAFT_05232: H281DRAFT_05232 - putative serine protein kinase, PrkA, at 196,841 to 198,763 _05232 Position (kb) 195 196Strain fitness (log2 ratio) -2 -1 0 1 2at 194.187 kb on - strand, within H281DRAFT_05230at 194.761 kb on - strandat 194.761 kb on - strandat 194.880 kb on + strandat 194.881 kb on - strandat 194.881 kb on - strandat 194.884 kb on + strandat 194.913 kb on + strandat 194.914 kb on - strandat 195.074 kb on + strandat 195.074 kb on + strandat 195.107 kb on + strandat 195.107 kb on + strandat 195.111 kb on - strandat 195.150 kb on + strandat 195.165 kb on + strandat 195.165 kb on + strandat 195.166 kb on - strandat 195.166 kb on - strandat 195.749 kb on + strand, within H281DRAFT_05231at 195.778 kb on + strand, within H281DRAFT_05231at 195.779 kb on - strand, within H281DRAFT_05231at 195.852 kb on + strand, within H281DRAFT_05231at 195.852 kb on + strand, within H281DRAFT_05231at 195.853 kb on - strand, within H281DRAFT_05231at 195.978 kb on + strandat 195.996 kb on + strandat 196.069 kb on + strandat 196.089 kb on + strandat 196.209 kb on + strandat 196.350 kb on - strandat 196.350 kb on - strandat 196.350 kb on - strandat 196.350 kb on - strandat 196.398 kb on + strandat 196.398 kb on + strandat 196.464 kb on - strandat 196.464 kb on - strandat 196.464 kb on - strandat 196.464 kb on - strandat 196.482 kb on + strandat 196.482 kb on + strandat 196.666 kb on + strandat 196.667 kb on - strandat 196.667 kb on - strandat 196.734 kb on + strandat 196.734 kb on + strandat 196.837 kb on + strandat 196.837 kb on + strandat 196.847 kb on - strandat 196.850 kb on + strandat 196.851 kb on - strandat 196.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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194,187 - H281DRAFT_05230 0.69 -0.1
194,761 - -0.1
194,761 - +0.0
194,880 + -0.1
194,881 - +0.6
194,881 - +1.0
194,884 + -1.7
194,913 + +0.5
194,914 - -0.1
195,074 + -0.7
195,074 + +0.7
195,107 + -0.3
195,107 + -0.3
195,111 - +0.2
195,150 + +0.6
195,165 + +2.0
195,165 + +0.7
195,166 - -1.2
195,166 - +2.0
195,749 + H281DRAFT_05231 0.75 +0.0
195,778 + H281DRAFT_05231 0.79 +0.7
195,779 - H281DRAFT_05231 0.79 +0.1
195,852 + H281DRAFT_05231 0.89 +0.1
195,852 + H281DRAFT_05231 0.89 +1.0
195,853 - H281DRAFT_05231 0.89 +0.6
195,978 + +0.6
195,996 + +0.7
196,069 + +0.5
196,089 + +0.4
196,209 + +0.2
196,350 - +0.8
196,350 - +0.7
196,350 - -0.6
196,350 - -0.1
196,398 + +0.5
196,398 + +0.2
196,464 - +0.2
196,464 - +0.2
196,464 - +0.0
196,464 - -1.2
196,482 + +0.9
196,482 + +0.9
196,666 + +0.7
196,667 - -0.7
196,667 - -0.3
196,734 + +0.1
196,734 + +1.7
196,837 + -0.8
196,837 + +1.4
196,847 - -1.1
196,850 + -2.2
196,851 - +2.4
196,911 - -0.5

Or see this region's nucleotide sequence