Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04895

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04894 and H281DRAFT_04895 are separated by 71 nucleotidesH281DRAFT_04895 and H281DRAFT_04896 are separated by 102 nucleotides H281DRAFT_04894: H281DRAFT_04894 - inner membrane transporter RhtA, at 44,476 to 45,366 _04894 H281DRAFT_04895: H281DRAFT_04895 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 45,438 to 45,989 _04895 H281DRAFT_04896: H281DRAFT_04896 - transcriptional regulator, AraC family with amidase-like domain, at 46,092 to 47,087 _04896 Position (kb) 45 46Strain fitness (log2 ratio) -2 -1 0 1at 44.711 kb on - strand, within H281DRAFT_04894at 44.797 kb on - strand, within H281DRAFT_04894at 44.999 kb on - strand, within H281DRAFT_04894at 45.170 kb on + strand, within H281DRAFT_04894at 45.297 kb on + strandat 45.461 kb on - strandat 45.463 kb on - strandat 46.808 kb on - strand, within H281DRAFT_04896at 46.820 kb on + strand, within H281DRAFT_04896at 46.895 kb on - strand, within H281DRAFT_04896

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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44,711 - H281DRAFT_04894 0.26 -0.3
44,797 - H281DRAFT_04894 0.36 -1.1
44,999 - H281DRAFT_04894 0.59 -1.5
45,170 + H281DRAFT_04894 0.78 +1.2
45,297 + -0.3
45,461 - +0.7
45,463 - -0.3
46,808 - H281DRAFT_04896 0.72 -0.9
46,820 + H281DRAFT_04896 0.73 -2.1
46,895 - H281DRAFT_04896 0.81 -0.5

Or see this region's nucleotide sequence