Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04887

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04886 and H281DRAFT_04887 overlap by 4 nucleotidesH281DRAFT_04887 and H281DRAFT_04888 overlap by 8 nucleotides H281DRAFT_04886: H281DRAFT_04886 - Glycosyltransferase involved in cell wall bisynthesis, at 30,336 to 31,973 _04886 H281DRAFT_04887: H281DRAFT_04887 - hypothetical protein, at 31,970 to 33,019 _04887 H281DRAFT_04888: H281DRAFT_04888 - protein of unknown function (DUF4118), at 33,012 to 34,415 _04888 Position (kb) 31 32 33 34Strain fitness (log2 ratio) -1 0 1at 31.129 kb on + strand, within H281DRAFT_04886at 31.298 kb on + strand, within H281DRAFT_04886at 31.300 kb on + strand, within H281DRAFT_04886at 31.301 kb on - strand, within H281DRAFT_04886at 31.301 kb on - strand, within H281DRAFT_04886at 31.373 kb on - strand, within H281DRAFT_04886at 31.393 kb on + strand, within H281DRAFT_04886at 31.746 kb on + strand, within H281DRAFT_04886at 31.751 kb on - strand, within H281DRAFT_04886at 32.317 kb on - strand, within H281DRAFT_04887at 32.686 kb on - strand, within H281DRAFT_04887at 33.330 kb on - strand, within H281DRAFT_04888at 33.420 kb on + strand, within H281DRAFT_04888at 33.452 kb on - strand, within H281DRAFT_04888at 33.828 kb on - strand, within H281DRAFT_04888at 33.941 kb on - strand, within H281DRAFT_04888at 33.953 kb on + strand, within H281DRAFT_04888at 33.954 kb on - strand, within H281DRAFT_04888

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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31,129 + H281DRAFT_04886 0.48 +0.0
31,298 + H281DRAFT_04886 0.59 +0.9
31,300 + H281DRAFT_04886 0.59 +0.9
31,301 - H281DRAFT_04886 0.59 -0.9
31,301 - H281DRAFT_04886 0.59 +0.3
31,373 - H281DRAFT_04886 0.63 +0.5
31,393 + H281DRAFT_04886 0.65 +1.7
31,746 + H281DRAFT_04886 0.86 -0.5
31,751 - H281DRAFT_04886 0.86 -0.3
32,317 - H281DRAFT_04887 0.33 -0.1
32,686 - H281DRAFT_04887 0.68 +0.7
33,330 - H281DRAFT_04888 0.23 -1.7
33,420 + H281DRAFT_04888 0.29 +0.1
33,452 - H281DRAFT_04888 0.31 -1.6
33,828 - H281DRAFT_04888 0.58 +0.1
33,941 - H281DRAFT_04888 0.66 +0.0
33,953 + H281DRAFT_04888 0.67 +0.3
33,954 - H281DRAFT_04888 0.67 +1.2

Or see this region's nucleotide sequence