Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04801

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04800 and H281DRAFT_04801 are separated by 25 nucleotidesH281DRAFT_04801 and H281DRAFT_04802 are separated by 506 nucleotides H281DRAFT_04800: H281DRAFT_04800 - protein SCO1/2, at 231,611 to 232,255 _04800 H281DRAFT_04801: H281DRAFT_04801 - galactose oxidase, at 232,281 to 234,239 _04801 H281DRAFT_04802: H281DRAFT_04802 - negative transcriptional regulator, PaiB family, at 234,746 to 235,381 _04802 Position (kb) 232 233 234 235Strain fitness (log2 ratio) -1 0 1at 231.295 kb on + strandat 231.891 kb on + strand, within H281DRAFT_04800at 231.892 kb on - strand, within H281DRAFT_04800at 232.253 kb on + strandat 232.765 kb on + strand, within H281DRAFT_04801at 232.962 kb on + strand, within H281DRAFT_04801at 233.031 kb on - strand, within H281DRAFT_04801at 233.203 kb on + strand, within H281DRAFT_04801at 233.308 kb on - strand, within H281DRAFT_04801at 233.308 kb on - strand, within H281DRAFT_04801at 233.312 kb on - strand, within H281DRAFT_04801at 233.312 kb on - strand, within H281DRAFT_04801at 233.808 kb on + strand, within H281DRAFT_04801at 233.919 kb on + strand, within H281DRAFT_04801at 233.966 kb on + strandat 233.993 kb on + strand, within H281DRAFT_04801at 234.114 kb on - strandat 234.175 kb on - strandat 234.297 kb on + strandat 234.448 kb on + strandat 234.487 kb on + strandat 234.497 kb on + strandat 234.583 kb on - strandat 234.929 kb on - strand, within H281DRAFT_04802at 235.129 kb on + strand, within H281DRAFT_04802at 235.160 kb on + strand, within H281DRAFT_04802

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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231,295 + +0.0
231,891 + H281DRAFT_04800 0.43 -0.7
231,892 - H281DRAFT_04800 0.44 -0.0
232,253 + +0.3
232,765 + H281DRAFT_04801 0.25 -0.0
232,962 + H281DRAFT_04801 0.35 -0.5
233,031 - H281DRAFT_04801 0.38 +0.3
233,203 + H281DRAFT_04801 0.47 +0.3
233,308 - H281DRAFT_04801 0.52 +0.1
233,308 - H281DRAFT_04801 0.52 +0.1
233,312 - H281DRAFT_04801 0.53 +0.1
233,312 - H281DRAFT_04801 0.53 -0.4
233,808 + H281DRAFT_04801 0.78 +0.1
233,919 + H281DRAFT_04801 0.84 -0.8
233,966 + +0.2
233,993 + H281DRAFT_04801 0.87 +0.4
234,114 - +0.4
234,175 - -0.1
234,297 + -0.5
234,448 + +1.2
234,487 + +0.2
234,497 + +0.2
234,583 - -0.1
234,929 - H281DRAFT_04802 0.29 -1.3
235,129 + H281DRAFT_04802 0.60 +0.1
235,160 + H281DRAFT_04802 0.65 -0.9

Or see this region's nucleotide sequence