Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04799

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04798 and H281DRAFT_04799 are separated by 102 nucleotidesH281DRAFT_04799 and H281DRAFT_04800 are separated by 346 nucleotides H281DRAFT_04798: H281DRAFT_04798 - Predicted xylanase/chitin deacetylase, at 228,430 to 229,359 _04798 H281DRAFT_04799: H281DRAFT_04799 - parallel beta-helix repeat (two copies), at 229,462 to 231,264 _04799 H281DRAFT_04800: H281DRAFT_04800 - protein SCO1/2, at 231,611 to 232,255 _04800 Position (kb) 229 230 231 232Strain fitness (log2 ratio) -1 0 1at 228.738 kb on + strand, within H281DRAFT_04798at 228.943 kb on + strand, within H281DRAFT_04798at 229.085 kb on - strand, within H281DRAFT_04798at 229.440 kb on - strandat 229.569 kb on + strandat 229.673 kb on + strand, within H281DRAFT_04799at 230.038 kb on - strand, within H281DRAFT_04799at 230.084 kb on - strand, within H281DRAFT_04799at 230.360 kb on + strand, within H281DRAFT_04799at 230.360 kb on + strand, within H281DRAFT_04799at 230.364 kb on + strand, within H281DRAFT_04799at 230.667 kb on + strand, within H281DRAFT_04799at 230.667 kb on + strand, within H281DRAFT_04799at 230.903 kb on - strand, within H281DRAFT_04799at 230.903 kb on - strand, within H281DRAFT_04799at 230.998 kb on + strand, within H281DRAFT_04799at 230.998 kb on + strand, within H281DRAFT_04799at 231.029 kb on + strand, within H281DRAFT_04799at 231.030 kb on - strand, within H281DRAFT_04799at 231.295 kb on + strandat 231.891 kb on + strand, within H281DRAFT_04800at 231.892 kb on - strand, within H281DRAFT_04800at 232.253 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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228,738 + H281DRAFT_04798 0.33 +0.1
228,943 + H281DRAFT_04798 0.55 +0.6
229,085 - H281DRAFT_04798 0.70 +1.4
229,440 - +0.1
229,569 + +0.3
229,673 + H281DRAFT_04799 0.12 -1.1
230,038 - H281DRAFT_04799 0.32 +0.7
230,084 - H281DRAFT_04799 0.34 -0.5
230,360 + H281DRAFT_04799 0.50 +0.7
230,360 + H281DRAFT_04799 0.50 +0.8
230,364 + H281DRAFT_04799 0.50 +0.8
230,667 + H281DRAFT_04799 0.67 +0.6
230,667 + H281DRAFT_04799 0.67 -0.7
230,903 - H281DRAFT_04799 0.80 -0.2
230,903 - H281DRAFT_04799 0.80 +0.4
230,998 + H281DRAFT_04799 0.85 -0.8
230,998 + H281DRAFT_04799 0.85 -1.7
231,029 + H281DRAFT_04799 0.87 +0.7
231,030 - H281DRAFT_04799 0.87 -0.4
231,295 + +0.0
231,891 + H281DRAFT_04800 0.43 -0.7
231,892 - H281DRAFT_04800 0.44 -0.0
232,253 + +0.3

Or see this region's nucleotide sequence