Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04364

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04362 and H281DRAFT_04363 are separated by 88 nucleotidesH281DRAFT_04363 and H281DRAFT_04364 overlap by 14 nucleotidesH281DRAFT_04364 and H281DRAFT_04365 overlap by 4 nucleotidesH281DRAFT_04365 and H281DRAFT_04366 are separated by 20 nucleotides H281DRAFT_04362: H281DRAFT_04362 - RNAse III (EC 3.1.26.3), at 79,254 to 80,624 _04362 H281DRAFT_04363: H281DRAFT_04363 - GTP-binding protein Era, at 80,713 to 81,576 _04363 H281DRAFT_04364: H281DRAFT_04364 - DNA replication and repair protein RecO, at 81,563 to 82,480 _04364 H281DRAFT_04365: H281DRAFT_04365 - pyridoxine 5'-phosphate synthase, at 82,477 to 83,241 _04365 H281DRAFT_04366: H281DRAFT_04366 - holo-[acyl-carrier protein] synthase, at 83,262 to 83,687 _04366 Position (kb) 81 82 83Strain fitness (log2 ratio) -1 0 1 2at 80.676 kb on + strandat 81.562 kb on + strandat 81.688 kb on + strand, within H281DRAFT_04364at 81.805 kb on + strand, within H281DRAFT_04364at 81.805 kb on + strand, within H281DRAFT_04364at 81.810 kb on - strand, within H281DRAFT_04364at 81.969 kb on + strand, within H281DRAFT_04364at 81.973 kb on + strand, within H281DRAFT_04364at 81.974 kb on - strand, within H281DRAFT_04364at 82.109 kb on + strand, within H281DRAFT_04364at 82.109 kb on + strand, within H281DRAFT_04364at 82.109 kb on + strand, within H281DRAFT_04364at 82.109 kb on + strand, within H281DRAFT_04364at 82.110 kb on - strand, within H281DRAFT_04364at 82.110 kb on - strand, within H281DRAFT_04364at 82.110 kb on - strand, within H281DRAFT_04364at 82.110 kb on - strand, within H281DRAFT_04364at 82.257 kb on - strand, within H281DRAFT_04364at 82.362 kb on - strand, within H281DRAFT_04364at 82.362 kb on - strand, within H281DRAFT_04364at 82.362 kb on - strand, within H281DRAFT_04364at 82.362 kb on - strand, within H281DRAFT_04364at 82.421 kb on + strandat 82.476 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
remove
80,676 + +0.3
81,562 + -0.4
81,688 + H281DRAFT_04364 0.14 -1.2
81,805 + H281DRAFT_04364 0.26 +0.5
81,805 + H281DRAFT_04364 0.26 +0.7
81,810 - H281DRAFT_04364 0.27 -0.7
81,969 + H281DRAFT_04364 0.44 -1.0
81,973 + H281DRAFT_04364 0.45 +0.2
81,974 - H281DRAFT_04364 0.45 -1.0
82,109 + H281DRAFT_04364 0.59 +1.8
82,109 + H281DRAFT_04364 0.59 +0.6
82,109 + H281DRAFT_04364 0.59 +0.4
82,109 + H281DRAFT_04364 0.59 +0.8
82,110 - H281DRAFT_04364 0.60 -0.3
82,110 - H281DRAFT_04364 0.60 -1.0
82,110 - H281DRAFT_04364 0.60 -0.3
82,110 - H281DRAFT_04364 0.60 -0.5
82,257 - H281DRAFT_04364 0.76 +0.4
82,362 - H281DRAFT_04364 0.87 -0.8
82,362 - H281DRAFT_04364 0.87 -0.1
82,362 - H281DRAFT_04364 0.87 -0.7
82,362 - H281DRAFT_04364 0.87 -0.5
82,421 + +0.8
82,476 + +0.0

Or see this region's nucleotide sequence