Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04331

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04330 and H281DRAFT_04331 are separated by 127 nucleotidesH281DRAFT_04331 and H281DRAFT_04332 are separated by 80 nucleotides H281DRAFT_04330: H281DRAFT_04330 - nicotinate phosphoribosyltransferase, at 45,678 to 46,928 _04330 H281DRAFT_04331: H281DRAFT_04331 - L-lactate dehydrogenase complex protein LldG, at 47,056 to 47,718 _04331 H281DRAFT_04332: H281DRAFT_04332 - transporter, UIT6 family, at 47,799 to 49,226 _04332 Position (kb) 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 46.122 kb on + strand, within H281DRAFT_04330at 46.122 kb on + strand, within H281DRAFT_04330at 46.123 kb on - strand, within H281DRAFT_04330at 46.123 kb on - strand, within H281DRAFT_04330at 46.123 kb on - strand, within H281DRAFT_04330at 46.133 kb on + strand, within H281DRAFT_04330at 46.134 kb on - strand, within H281DRAFT_04330at 46.236 kb on + strand, within H281DRAFT_04330at 46.338 kb on + strand, within H281DRAFT_04330at 46.386 kb on + strand, within H281DRAFT_04330at 46.386 kb on + strand, within H281DRAFT_04330at 46.464 kb on + strand, within H281DRAFT_04330at 46.501 kb on - strand, within H281DRAFT_04330at 46.536 kb on + strand, within H281DRAFT_04330at 46.536 kb on + strand, within H281DRAFT_04330at 46.536 kb on + strand, within H281DRAFT_04330at 46.537 kb on - strand, within H281DRAFT_04330at 46.537 kb on - strand, within H281DRAFT_04330at 46.537 kb on - strand, within H281DRAFT_04330at 46.537 kb on - strand, within H281DRAFT_04330at 46.537 kb on - strand, within H281DRAFT_04330at 46.537 kb on - strand, within H281DRAFT_04330at 46.614 kb on + strand, within H281DRAFT_04330at 46.615 kb on - strand, within H281DRAFT_04330at 46.696 kb on - strand, within H281DRAFT_04330at 46.765 kb on - strand, within H281DRAFT_04330at 46.867 kb on - strandat 46.867 kb on - strandat 46.969 kb on + strandat 46.969 kb on + strandat 46.970 kb on - strandat 47.022 kb on + strandat 47.414 kb on + strand, within H281DRAFT_04331at 47.414 kb on + strand, within H281DRAFT_04331at 47.488 kb on + strand, within H281DRAFT_04331at 47.488 kb on + strand, within H281DRAFT_04331at 47.488 kb on + strand, within H281DRAFT_04331at 47.488 kb on + strand, within H281DRAFT_04331at 47.488 kb on + strand, within H281DRAFT_04331at 47.488 kb on + strand, within H281DRAFT_04331at 47.573 kb on + strand, within H281DRAFT_04331at 47.573 kb on + strand, within H281DRAFT_04331at 47.573 kb on + strand, within H281DRAFT_04331at 47.749 kb on + strandat 47.798 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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46,122 + H281DRAFT_04330 0.35 -0.1
46,122 + H281DRAFT_04330 0.35 +0.4
46,123 - H281DRAFT_04330 0.36 +0.0
46,123 - H281DRAFT_04330 0.36 -0.4
46,123 - H281DRAFT_04330 0.36 -0.3
46,133 + H281DRAFT_04330 0.36 -0.7
46,134 - H281DRAFT_04330 0.36 -0.9
46,236 + H281DRAFT_04330 0.45 +0.2
46,338 + H281DRAFT_04330 0.53 -1.6
46,386 + H281DRAFT_04330 0.57 +1.4
46,386 + H281DRAFT_04330 0.57 -1.4
46,464 + H281DRAFT_04330 0.63 +0.3
46,501 - H281DRAFT_04330 0.66 -0.7
46,536 + H281DRAFT_04330 0.69 -1.4
46,536 + H281DRAFT_04330 0.69 +0.1
46,536 + H281DRAFT_04330 0.69 -0.2
46,537 - H281DRAFT_04330 0.69 -0.9
46,537 - H281DRAFT_04330 0.69 -0.1
46,537 - H281DRAFT_04330 0.69 -0.4
46,537 - H281DRAFT_04330 0.69 -0.9
46,537 - H281DRAFT_04330 0.69 -0.5
46,537 - H281DRAFT_04330 0.69 -0.9
46,614 + H281DRAFT_04330 0.75 -1.3
46,615 - H281DRAFT_04330 0.75 +0.7
46,696 - H281DRAFT_04330 0.81 +0.6
46,765 - H281DRAFT_04330 0.87 +1.0
46,867 - -1.1
46,867 - +1.1
46,969 + -1.7
46,969 + -0.1
46,970 - +0.7
47,022 + -0.4
47,414 + H281DRAFT_04331 0.54 -0.1
47,414 + H281DRAFT_04331 0.54 -0.1
47,488 + H281DRAFT_04331 0.65 +0.3
47,488 + H281DRAFT_04331 0.65 -1.2
47,488 + H281DRAFT_04331 0.65 -1.0
47,488 + H281DRAFT_04331 0.65 -0.6
47,488 + H281DRAFT_04331 0.65 -2.1
47,488 + H281DRAFT_04331 0.65 -0.0
47,573 + H281DRAFT_04331 0.78 -0.6
47,573 + H281DRAFT_04331 0.78 +0.2
47,573 + H281DRAFT_04331 0.78 -0.5
47,749 + -0.5
47,798 + +1.9

Or see this region's nucleotide sequence