Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04189

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04188 and H281DRAFT_04189 are separated by 391 nucleotidesH281DRAFT_04189 and H281DRAFT_04190 are separated by 505 nucleotides H281DRAFT_04188: H281DRAFT_04188 - fructose-bisphosphate aldolase, at 306,552 to 307,616 _04188 H281DRAFT_04189: H281DRAFT_04189 - pyruvate kinase, at 308,008 to 309,444 _04189 H281DRAFT_04190: H281DRAFT_04190 - phosphoglycerate kinase, at 309,950 to 311,143 _04190 Position (kb) 308 309 310Strain fitness (log2 ratio) -2 -1 0 1at 307.629 kb on + strandat 307.630 kb on - strandat 307.695 kb on - strandat 307.930 kb on - strandat 307.937 kb on + strandat 308.012 kb on + strandat 308.583 kb on - strand, within H281DRAFT_04189at 308.583 kb on - strand, within H281DRAFT_04189at 308.583 kb on - strand, within H281DRAFT_04189at 308.583 kb on - strand, within H281DRAFT_04189at 308.583 kb on - strand, within H281DRAFT_04189at 309.952 kb on - strandat 309.969 kb on - strandat 310.036 kb on - strandat 310.036 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
remove
307,629 + -0.0
307,630 - -2.5
307,695 - -0.5
307,930 - -2.4
307,937 + +1.3
308,012 + +0.0
308,583 - H281DRAFT_04189 0.40 -0.7
308,583 - H281DRAFT_04189 0.40 -0.6
308,583 - H281DRAFT_04189 0.40 -0.5
308,583 - H281DRAFT_04189 0.40 -2.0
308,583 - H281DRAFT_04189 0.40 -0.5
309,952 - -1.2
309,969 - +0.3
310,036 - +0.8
310,036 - +0.8

Or see this region's nucleotide sequence