Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03388

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03387 and H281DRAFT_03388 overlap by 4 nucleotidesH281DRAFT_03388 and H281DRAFT_03389 are separated by 118 nucleotides H281DRAFT_03387: H281DRAFT_03387 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 455,192 to 456,340 _03387 H281DRAFT_03388: H281DRAFT_03388 - Predicted dithiol-disulfide isomerase, DsbA family, at 456,337 to 456,990 _03388 H281DRAFT_03389: H281DRAFT_03389 - transcriptional regulator, LysR family, at 457,109 to 458,041 _03389 Position (kb) 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1at 455.829 kb on + strand, within H281DRAFT_03387at 456.177 kb on - strand, within H281DRAFT_03387at 456.446 kb on - strand, within H281DRAFT_03388at 456.540 kb on + strand, within H281DRAFT_03388at 456.541 kb on - strand, within H281DRAFT_03388at 456.869 kb on + strand, within H281DRAFT_03388at 456.870 kb on - strand, within H281DRAFT_03388at 457.024 kb on + strandat 457.302 kb on - strand, within H281DRAFT_03389at 457.412 kb on + strand, within H281DRAFT_03389at 457.412 kb on + strand, within H281DRAFT_03389at 457.601 kb on + strand, within H281DRAFT_03389at 457.691 kb on + strand, within H281DRAFT_03389at 457.691 kb on + strand, within H281DRAFT_03389at 457.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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455,829 + H281DRAFT_03387 0.55 -0.4
456,177 - H281DRAFT_03387 0.86 +0.3
456,446 - H281DRAFT_03388 0.17 -0.1
456,540 + H281DRAFT_03388 0.31 -0.1
456,541 - H281DRAFT_03388 0.31 -0.7
456,869 + H281DRAFT_03388 0.81 +0.2
456,870 - H281DRAFT_03388 0.81 -3.5
457,024 + +0.9
457,302 - H281DRAFT_03389 0.21 -0.1
457,412 + H281DRAFT_03389 0.32 -0.3
457,412 + H281DRAFT_03389 0.32 +0.3
457,601 + H281DRAFT_03389 0.53 +0.6
457,691 + H281DRAFT_03389 0.62 +1.2
457,691 + H281DRAFT_03389 0.62 +1.2
457,956 - +0.5

Or see this region's nucleotide sequence