Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02579

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02577 and H281DRAFT_02578 are separated by 45 nucleotidesH281DRAFT_02578 and H281DRAFT_02579 are separated by 10 nucleotidesH281DRAFT_02579 and H281DRAFT_02580 overlap by 1 nucleotidesH281DRAFT_02580 and H281DRAFT_02581 are separated by 181 nucleotides H281DRAFT_02577: H281DRAFT_02577 - Sugar phosphate isomerase/epimerase, at 152,119 to 152,934 _02577 H281DRAFT_02578: H281DRAFT_02578 - hydroxyquinol 1,2-dioxygenase, at 152,980 to 153,846 _02578 H281DRAFT_02579: H281DRAFT_02579 - maleylacetate reductase, at 153,857 to 154,942 _02579 H281DRAFT_02580: H281DRAFT_02580 - SnoaL-like domain-containing protein, at 154,942 to 155,541 _02580 H281DRAFT_02581: H281DRAFT_02581 - 3-oxoacyl-[acyl-carrier protein] reductase, at 155,723 to 156,496 _02581 Position (kb) 153 154 155Strain fitness (log2 ratio) -1 0 1at 152.953 kb on + strandat 153.156 kb on + strand, within H281DRAFT_02578at 154.476 kb on + strand, within H281DRAFT_02579at 154.477 kb on - strand, within H281DRAFT_02579at 154.572 kb on + strand, within H281DRAFT_02579at 154.964 kb on + strandat 155.019 kb on + strand, within H281DRAFT_02580at 155.056 kb on - strand, within H281DRAFT_02580at 155.243 kb on - strand, within H281DRAFT_02580

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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152,953 + -0.8
153,156 + H281DRAFT_02578 0.20 +1.3
154,476 + H281DRAFT_02579 0.57 +0.4
154,477 - H281DRAFT_02579 0.57 +0.1
154,572 + H281DRAFT_02579 0.66 +1.3
154,964 + +0.3
155,019 + H281DRAFT_02580 0.13 -0.3
155,056 - H281DRAFT_02580 0.19 -0.6
155,243 - H281DRAFT_02580 0.50 -0.5

Or see this region's nucleotide sequence