Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02493

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02492 and H281DRAFT_02493 are separated by 1 nucleotidesH281DRAFT_02493 and H281DRAFT_02494 are separated by 7 nucleotidesH281DRAFT_02494 and H281DRAFT_02495 are separated by 181 nucleotides H281DRAFT_02492: H281DRAFT_02492 - Methyltransferase domain-containing protein, at 68,601 to 70,007 _02492 H281DRAFT_02493: H281DRAFT_02493 - hypothetical protein, at 70,009 to 71,346 _02493 H281DRAFT_02494: H281DRAFT_02494 - hypothetical protein, at 71,354 to 71,758 _02494 H281DRAFT_02495: H281DRAFT_02495 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 71,940 to 72,971 _02495 Position (kb) 70 71 72Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 69.065 kb on + strand, within H281DRAFT_02492at 69.106 kb on + strand, within H281DRAFT_02492at 69.106 kb on + strand, within H281DRAFT_02492at 69.106 kb on + strand, within H281DRAFT_02492at 69.208 kb on + strand, within H281DRAFT_02492at 69.208 kb on + strand, within H281DRAFT_02492at 69.209 kb on - strand, within H281DRAFT_02492at 69.209 kb on - strand, within H281DRAFT_02492at 69.330 kb on + strand, within H281DRAFT_02492at 69.330 kb on + strand, within H281DRAFT_02492at 69.330 kb on + strand, within H281DRAFT_02492at 69.331 kb on - strand, within H281DRAFT_02492at 69.412 kb on - strand, within H281DRAFT_02492at 69.472 kb on + strand, within H281DRAFT_02492at 69.472 kb on + strand, within H281DRAFT_02492at 69.473 kb on - strand, within H281DRAFT_02492at 69.473 kb on - strandat 69.632 kb on + strand, within H281DRAFT_02492at 69.632 kb on + strand, within H281DRAFT_02492at 69.632 kb on + strand, within H281DRAFT_02492at 69.632 kb on + strand, within H281DRAFT_02492at 69.633 kb on - strand, within H281DRAFT_02492at 69.633 kb on - strand, within H281DRAFT_02492at 69.717 kb on + strand, within H281DRAFT_02492at 69.717 kb on + strand, within H281DRAFT_02492at 69.717 kb on + strandat 69.718 kb on - strand, within H281DRAFT_02492at 69.738 kb on + strand, within H281DRAFT_02492at 69.814 kb on + strand, within H281DRAFT_02492at 69.874 kb on - strandat 69.874 kb on - strandat 69.882 kb on + strandat 69.943 kb on - strandat 70.043 kb on - strandat 70.136 kb on - strandat 70.222 kb on + strand, within H281DRAFT_02493at 70.306 kb on + strand, within H281DRAFT_02493at 70.306 kb on + strandat 70.306 kb on + strand, within H281DRAFT_02493at 70.337 kb on - strand, within H281DRAFT_02493at 70.337 kb on - strand, within H281DRAFT_02493at 70.432 kb on + strand, within H281DRAFT_02493at 70.435 kb on + strand, within H281DRAFT_02493at 70.435 kb on + strand, within H281DRAFT_02493at 70.435 kb on + strand, within H281DRAFT_02493at 70.439 kb on + strand, within H281DRAFT_02493at 70.439 kb on + strand, within H281DRAFT_02493at 70.440 kb on - strand, within H281DRAFT_02493at 70.440 kb on - strand, within H281DRAFT_02493at 70.440 kb on - strand, within H281DRAFT_02493at 70.440 kb on - strand, within H281DRAFT_02493at 70.440 kb on - strand, within H281DRAFT_02493at 70.440 kb on - strand, within H281DRAFT_02493at 70.534 kb on + strand, within H281DRAFT_02493at 70.535 kb on - strand, within H281DRAFT_02493at 70.535 kb on - strand, within H281DRAFT_02493at 70.535 kb on - strand, within H281DRAFT_02493at 70.540 kb on + strand, within H281DRAFT_02493at 70.540 kb on + strand, within H281DRAFT_02493at 70.541 kb on - strand, within H281DRAFT_02493at 70.541 kb on - strand, within H281DRAFT_02493at 70.541 kb on - strand, within H281DRAFT_02493at 70.652 kb on + strand, within H281DRAFT_02493at 70.653 kb on - strand, within H281DRAFT_02493at 70.683 kb on + strand, within H281DRAFT_02493at 70.839 kb on + strand, within H281DRAFT_02493at 70.839 kb on + strand, within H281DRAFT_02493at 70.840 kb on - strand, within H281DRAFT_02493at 71.247 kb on + strandat 71.247 kb on + strandat 71.248 kb on - strandat 71.252 kb on - strandat 71.282 kb on + strandat 71.363 kb on - strandat 71.420 kb on + strand, within H281DRAFT_02494at 71.448 kb on - strand, within H281DRAFT_02494at 71.589 kb on - strand, within H281DRAFT_02494at 71.597 kb on - strand, within H281DRAFT_02494at 71.597 kb on - strand, within H281DRAFT_02494at 71.621 kb on + strand, within H281DRAFT_02494at 71.622 kb on - strand, within H281DRAFT_02494at 71.936 kb on - strandat 72.015 kb on + strandat 72.217 kb on - strand, within H281DRAFT_02495at 72.263 kb on - strand, within H281DRAFT_02495at 72.270 kb on + strand, within H281DRAFT_02495at 72.270 kb on + strand, within H281DRAFT_02495at 72.270 kb on + strand, within H281DRAFT_02495at 72.290 kb on + strand, within H281DRAFT_02495

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
remove
69,065 + H281DRAFT_02492 0.33 -0.1
69,106 + H281DRAFT_02492 0.36 +0.1
69,106 + H281DRAFT_02492 0.36 +0.2
69,106 + H281DRAFT_02492 0.36 +0.5
69,208 + H281DRAFT_02492 0.43 +0.6
69,208 + H281DRAFT_02492 0.43 +0.8
69,209 - H281DRAFT_02492 0.43 +1.0
69,209 - H281DRAFT_02492 0.43 +1.4
69,330 + H281DRAFT_02492 0.52 -1.7
69,330 + H281DRAFT_02492 0.52 +0.7
69,330 + H281DRAFT_02492 0.52 -0.1
69,331 - H281DRAFT_02492 0.52 +0.2
69,412 - H281DRAFT_02492 0.58 +0.2
69,472 + H281DRAFT_02492 0.62 +0.4
69,472 + H281DRAFT_02492 0.62 +1.1
69,473 - H281DRAFT_02492 0.62 +1.1
69,473 - +1.4
69,632 + H281DRAFT_02492 0.73 -0.6
69,632 + H281DRAFT_02492 0.73 +0.5
69,632 + H281DRAFT_02492 0.73 +0.1
69,632 + H281DRAFT_02492 0.73 +0.4
69,633 - H281DRAFT_02492 0.73 +0.5
69,633 - H281DRAFT_02492 0.73 +0.4
69,717 + H281DRAFT_02492 0.79 +1.2
69,717 + H281DRAFT_02492 0.79 +1.5
69,717 + +0.4
69,718 - H281DRAFT_02492 0.79 +0.7
69,738 + H281DRAFT_02492 0.81 -1.4
69,814 + H281DRAFT_02492 0.86 +0.0
69,874 - +1.1
69,874 - +1.2
69,882 + +0.4
69,943 - +0.3
70,043 - +0.4
70,136 - +0.6
70,222 + H281DRAFT_02493 0.16 -4.2
70,306 + H281DRAFT_02493 0.22 +0.2
70,306 + -1.2
70,306 + H281DRAFT_02493 0.22 +1.4
70,337 - H281DRAFT_02493 0.25 +0.7
70,337 - H281DRAFT_02493 0.25 -0.1
70,432 + H281DRAFT_02493 0.32 -0.3
70,435 + H281DRAFT_02493 0.32 +1.2
70,435 + H281DRAFT_02493 0.32 +0.4
70,435 + H281DRAFT_02493 0.32 +0.8
70,439 + H281DRAFT_02493 0.32 +0.4
70,439 + H281DRAFT_02493 0.32 -0.1
70,440 - H281DRAFT_02493 0.32 +0.9
70,440 - H281DRAFT_02493 0.32 +0.4
70,440 - H281DRAFT_02493 0.32 +0.3
70,440 - H281DRAFT_02493 0.32 +0.7
70,440 - H281DRAFT_02493 0.32 +0.5
70,440 - H281DRAFT_02493 0.32 +0.1
70,534 + H281DRAFT_02493 0.39 +0.5
70,535 - H281DRAFT_02493 0.39 -1.7
70,535 - H281DRAFT_02493 0.39 +0.6
70,535 - H281DRAFT_02493 0.39 -0.3
70,540 + H281DRAFT_02493 0.40 +0.4
70,540 + H281DRAFT_02493 0.40 +0.5
70,541 - H281DRAFT_02493 0.40 -0.3
70,541 - H281DRAFT_02493 0.40 +0.7
70,541 - H281DRAFT_02493 0.40 +0.4
70,652 + H281DRAFT_02493 0.48 +1.3
70,653 - H281DRAFT_02493 0.48 -0.1
70,683 + H281DRAFT_02493 0.50 +0.4
70,839 + H281DRAFT_02493 0.62 +1.0
70,839 + H281DRAFT_02493 0.62 +0.6
70,840 - H281DRAFT_02493 0.62 +0.4
71,247 + +1.0
71,247 + +1.9
71,248 - +0.1
71,252 - -0.1
71,282 + -0.3
71,363 - +0.1
71,420 + H281DRAFT_02494 0.16 +1.4
71,448 - H281DRAFT_02494 0.23 +0.6
71,589 - H281DRAFT_02494 0.58 +0.2
71,597 - H281DRAFT_02494 0.60 +0.3
71,597 - H281DRAFT_02494 0.60 -0.5
71,621 + H281DRAFT_02494 0.66 -0.1
71,622 - H281DRAFT_02494 0.66 +1.0
71,936 - +0.6
72,015 + -1.5
72,217 - H281DRAFT_02495 0.27 +0.1
72,263 - H281DRAFT_02495 0.31 -1.0
72,270 + H281DRAFT_02495 0.32 -1.5
72,270 + H281DRAFT_02495 0.32 -1.2
72,270 + H281DRAFT_02495 0.32 -3.9
72,290 + H281DRAFT_02495 0.34 -1.9

Or see this region's nucleotide sequence