Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02057

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02055 and H281DRAFT_02056 are separated by 8 nucleotidesH281DRAFT_02056 and H281DRAFT_02057 are separated by 180 nucleotidesH281DRAFT_02057 and H281DRAFT_02058 are separated by 31 nucleotidesH281DRAFT_02058 and H281DRAFT_02059 are separated by 30 nucleotides H281DRAFT_02055: H281DRAFT_02055 - hypothetical protein, at 178,450 to 179,094 _02055 H281DRAFT_02056: H281DRAFT_02056 - (2Fe-2S) ferredoxin, at 179,103 to 179,426 _02056 H281DRAFT_02057: H281DRAFT_02057 - VanZ like family protein, at 179,607 to 180,770 _02057 H281DRAFT_02058: H281DRAFT_02058 - cholesterol transport system auxiliary component, at 180,802 to 181,443 _02058 H281DRAFT_02059: H281DRAFT_02059 - phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein, at 181,474 to 182,436 _02059 Position (kb) 179 180 181Strain fitness (log2 ratio) -3 -2 -1 0 1at 178.883 kb on + strand, within H281DRAFT_02055at 178.883 kb on + strand, within H281DRAFT_02055at 178.884 kb on - strand, within H281DRAFT_02055at 178.884 kb on - strand, within H281DRAFT_02055at 178.884 kb on - strand, within H281DRAFT_02055at 178.892 kb on + strand, within H281DRAFT_02055at 179.072 kb on + strandat 179.072 kb on - strandat 179.082 kb on + strandat 179.082 kb on + strandat 179.082 kb on + strandat 179.083 kb on - strandat 179.083 kb on - strandat 179.104 kb on + strandat 179.188 kb on + strand, within H281DRAFT_02056at 179.188 kb on + strand, within H281DRAFT_02056at 179.188 kb on + strand, within H281DRAFT_02056at 179.188 kb on + strand, within H281DRAFT_02056at 179.189 kb on - strand, within H281DRAFT_02056at 179.189 kb on - strand, within H281DRAFT_02056at 179.189 kb on - strand, within H281DRAFT_02056at 179.189 kb on - strand, within H281DRAFT_02056at 179.189 kb on - strand, within H281DRAFT_02056at 179.195 kb on - strand, within H281DRAFT_02056at 179.320 kb on + strand, within H281DRAFT_02056at 179.387 kb on + strandat 179.407 kb on + strandat 179.407 kb on + strandat 179.408 kb on - strandat 179.408 kb on - strandat 179.408 kb on - strandat 179.408 kb on - strandat 179.413 kb on + strandat 179.432 kb on - strandat 179.432 kb on - strandat 179.460 kb on + strandat 179.461 kb on - strandat 179.566 kb on + strandat 179.566 kb on + strandat 179.566 kb on + strandat 179.608 kb on + strandat 179.608 kb on + strandat 179.609 kb on - strandat 179.609 kb on - strandat 179.957 kb on + strand, within H281DRAFT_02057at 179.958 kb on - strand, within H281DRAFT_02057at 179.991 kb on - strand, within H281DRAFT_02057at 179.991 kb on - strand, within H281DRAFT_02057at 179.994 kb on + strand, within H281DRAFT_02057at 179.994 kb on + strand, within H281DRAFT_02057at 179.994 kb on + strand, within H281DRAFT_02057at 179.994 kb on + strand, within H281DRAFT_02057at 179.995 kb on - strand, within H281DRAFT_02057at 179.995 kb on - strand, within H281DRAFT_02057at 180.221 kb on + strand, within H281DRAFT_02057at 180.250 kb on + strand, within H281DRAFT_02057at 180.250 kb on + strand, within H281DRAFT_02057at 180.250 kb on + strand, within H281DRAFT_02057at 180.251 kb on - strand, within H281DRAFT_02057at 180.251 kb on - strand, within H281DRAFT_02057at 180.251 kb on - strand, within H281DRAFT_02057at 180.324 kb on + strand, within H281DRAFT_02057at 180.325 kb on - strand, within H281DRAFT_02057at 180.325 kb on - strand, within H281DRAFT_02057at 180.448 kb on + strand, within H281DRAFT_02057at 180.449 kb on - strand, within H281DRAFT_02057at 180.449 kb on - strand, within H281DRAFT_02057at 180.553 kb on - strand, within H281DRAFT_02057at 180.572 kb on - strand, within H281DRAFT_02057at 180.572 kb on - strand, within H281DRAFT_02057at 180.691 kb on + strandat 180.692 kb on - strandat 180.692 kb on - strandat 180.710 kb on - strandat 180.710 kb on - strandat 181.311 kb on - strand, within H281DRAFT_02058at 181.504 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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178,883 + H281DRAFT_02055 0.67 -0.2
178,883 + H281DRAFT_02055 0.67 +0.2
178,884 - H281DRAFT_02055 0.67 -1.4
178,884 - H281DRAFT_02055 0.67 -0.9
178,884 - H281DRAFT_02055 0.67 -0.7
178,892 + H281DRAFT_02055 0.69 -0.3
179,072 + -0.7
179,072 - -0.7
179,082 + +0.3
179,082 + -0.4
179,082 + -0.4
179,083 - -0.1
179,083 - -0.0
179,104 + -0.2
179,188 + H281DRAFT_02056 0.26 -0.9
179,188 + H281DRAFT_02056 0.26 +0.9
179,188 + H281DRAFT_02056 0.26 +0.8
179,188 + H281DRAFT_02056 0.26 -0.0
179,189 - H281DRAFT_02056 0.27 +0.2
179,189 - H281DRAFT_02056 0.27 +0.5
179,189 - H281DRAFT_02056 0.27 -1.1
179,189 - H281DRAFT_02056 0.27 -0.7
179,189 - H281DRAFT_02056 0.27 -1.0
179,195 - H281DRAFT_02056 0.28 -0.1
179,320 + H281DRAFT_02056 0.67 +1.1
179,387 + +0.9
179,407 + +0.9
179,407 + -1.1
179,408 - -0.4
179,408 - -0.5
179,408 - +0.6
179,408 - -0.7
179,413 + +0.5
179,432 - +0.4
179,432 - -1.4
179,460 + -1.1
179,461 - -0.1
179,566 + -0.4
179,566 + +1.3
179,566 + -0.0
179,608 + -3.0
179,608 + +0.8
179,609 - -0.4
179,609 - -0.1
179,957 + H281DRAFT_02057 0.30 +0.7
179,958 - H281DRAFT_02057 0.30 +0.5
179,991 - H281DRAFT_02057 0.33 +0.1
179,991 - H281DRAFT_02057 0.33 +0.5
179,994 + H281DRAFT_02057 0.33 -1.2
179,994 + H281DRAFT_02057 0.33 +1.0
179,994 + H281DRAFT_02057 0.33 +0.3
179,994 + H281DRAFT_02057 0.33 +1.3
179,995 - H281DRAFT_02057 0.33 -0.2
179,995 - H281DRAFT_02057 0.33 +0.3
180,221 + H281DRAFT_02057 0.53 +0.4
180,250 + H281DRAFT_02057 0.55 -0.7
180,250 + H281DRAFT_02057 0.55 -0.0
180,250 + H281DRAFT_02057 0.55 +0.4
180,251 - H281DRAFT_02057 0.55 +1.2
180,251 - H281DRAFT_02057 0.55 -0.2
180,251 - H281DRAFT_02057 0.55 +0.3
180,324 + H281DRAFT_02057 0.62 -0.3
180,325 - H281DRAFT_02057 0.62 -0.4
180,325 - H281DRAFT_02057 0.62 +0.4
180,448 + H281DRAFT_02057 0.72 -0.3
180,449 - H281DRAFT_02057 0.72 +0.4
180,449 - H281DRAFT_02057 0.72 -0.9
180,553 - H281DRAFT_02057 0.81 -1.5
180,572 - H281DRAFT_02057 0.83 +0.7
180,572 - H281DRAFT_02057 0.83 +0.2
180,691 + +0.5
180,692 - +0.1
180,692 - +0.4
180,710 - +0.2
180,710 - +0.3
181,311 - H281DRAFT_02058 0.79 +0.8
181,504 - +0.1

Or see this region's nucleotide sequence