Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02055

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02054 and H281DRAFT_02055 are separated by 334 nucleotidesH281DRAFT_02055 and H281DRAFT_02056 are separated by 8 nucleotidesH281DRAFT_02056 and H281DRAFT_02057 are separated by 180 nucleotides H281DRAFT_02054: H281DRAFT_02054 - penicillin-binding protein 6. Serine peptidase. MEROPS family S11, at 176,886 to 178,115 _02054 H281DRAFT_02055: H281DRAFT_02055 - hypothetical protein, at 178,450 to 179,094 _02055 H281DRAFT_02056: H281DRAFT_02056 - (2Fe-2S) ferredoxin, at 179,103 to 179,426 _02056 H281DRAFT_02057: H281DRAFT_02057 - VanZ like family protein, at 179,607 to 180,770 _02057 Position (kb) 178 179 180Strain fitness (log2 ratio) -3 -2 -1 0 1at 177.454 kb on + strand, within H281DRAFT_02054at 177.454 kb on + strand, within H281DRAFT_02054at 177.455 kb on - strand, within H281DRAFT_02054at 177.455 kb on - strand, within H281DRAFT_02054at 177.484 kb on + strand, within H281DRAFT_02054at 177.484 kb on + strand, within H281DRAFT_02054at 177.484 kb on + strand, within H281DRAFT_02054at 177.485 kb on - strand, within H281DRAFT_02054at 177.485 kb on - strand, within H281DRAFT_02054at 177.487 kb on + strand, within H281DRAFT_02054at 177.547 kb on + strand, within H281DRAFT_02054at 177.547 kb on + strand, within H281DRAFT_02054at 177.548 kb on - strand, within H281DRAFT_02054at 177.548 kb on - strand, within H281DRAFT_02054at 177.548 kb on - strand, within H281DRAFT_02054at 177.712 kb on + strand, within H281DRAFT_02054at 177.856 kb on + strand, within H281DRAFT_02054at 177.856 kb on + strand, within H281DRAFT_02054at 178.051 kb on - strandat 178.116 kb on - strandat 178.116 kb on - strandat 178.134 kb on + strandat 178.134 kb on + strandat 178.134 kb on + strandat 178.135 kb on - strandat 178.135 kb on - strandat 178.135 kb on - strandat 178.136 kb on + strandat 178.201 kb on - strandat 178.265 kb on + strandat 178.298 kb on - strandat 178.353 kb on + strandat 178.353 kb on + strandat 178.355 kb on + strandat 178.355 kb on + strandat 178.355 kb on + strandat 178.355 kb on + strandat 178.355 kb on + strandat 178.356 kb on - strandat 178.356 kb on - strandat 178.364 kb on + strandat 178.415 kb on - strandat 178.420 kb on + strandat 178.485 kb on + strandat 178.883 kb on + strand, within H281DRAFT_02055at 178.883 kb on + strand, within H281DRAFT_02055at 178.884 kb on - strand, within H281DRAFT_02055at 178.884 kb on - strand, within H281DRAFT_02055at 178.884 kb on - strand, within H281DRAFT_02055at 178.892 kb on + strand, within H281DRAFT_02055at 179.072 kb on + strandat 179.072 kb on - strandat 179.082 kb on + strandat 179.082 kb on + strandat 179.082 kb on + strandat 179.083 kb on - strandat 179.083 kb on - strandat 179.104 kb on + strandat 179.188 kb on + strand, within H281DRAFT_02056at 179.188 kb on + strand, within H281DRAFT_02056at 179.188 kb on + strand, within H281DRAFT_02056at 179.188 kb on + strand, within H281DRAFT_02056at 179.189 kb on - strand, within H281DRAFT_02056at 179.189 kb on - strand, within H281DRAFT_02056at 179.189 kb on - strand, within H281DRAFT_02056at 179.189 kb on - strand, within H281DRAFT_02056at 179.189 kb on - strand, within H281DRAFT_02056at 179.195 kb on - strand, within H281DRAFT_02056at 179.320 kb on + strand, within H281DRAFT_02056at 179.387 kb on + strandat 179.407 kb on + strandat 179.407 kb on + strandat 179.408 kb on - strandat 179.408 kb on - strandat 179.408 kb on - strandat 179.408 kb on - strandat 179.413 kb on + strandat 179.432 kb on - strandat 179.432 kb on - strandat 179.460 kb on + strandat 179.461 kb on - strandat 179.566 kb on + strandat 179.566 kb on + strandat 179.566 kb on + strandat 179.608 kb on + strandat 179.608 kb on + strandat 179.609 kb on - strandat 179.609 kb on - strandat 179.957 kb on + strand, within H281DRAFT_02057at 179.958 kb on - strand, within H281DRAFT_02057at 179.991 kb on - strand, within H281DRAFT_02057at 179.991 kb on - strand, within H281DRAFT_02057at 179.994 kb on + strand, within H281DRAFT_02057at 179.994 kb on + strand, within H281DRAFT_02057at 179.994 kb on + strand, within H281DRAFT_02057at 179.994 kb on + strand, within H281DRAFT_02057at 179.995 kb on - strand, within H281DRAFT_02057at 179.995 kb on - strand, within H281DRAFT_02057

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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177,454 + H281DRAFT_02054 0.46 -0.2
177,454 + H281DRAFT_02054 0.46 +0.2
177,455 - H281DRAFT_02054 0.46 +0.8
177,455 - H281DRAFT_02054 0.46 +0.1
177,484 + H281DRAFT_02054 0.49 +0.6
177,484 + H281DRAFT_02054 0.49 +0.3
177,484 + H281DRAFT_02054 0.49 +0.4
177,485 - H281DRAFT_02054 0.49 -2.6
177,485 - H281DRAFT_02054 0.49 -0.1
177,487 + H281DRAFT_02054 0.49 +0.8
177,547 + H281DRAFT_02054 0.54 +0.3
177,547 + H281DRAFT_02054 0.54 +1.6
177,548 - H281DRAFT_02054 0.54 -0.3
177,548 - H281DRAFT_02054 0.54 +0.8
177,548 - H281DRAFT_02054 0.54 -0.4
177,712 + H281DRAFT_02054 0.67 +0.8
177,856 + H281DRAFT_02054 0.79 -2.9
177,856 + H281DRAFT_02054 0.79 +0.5
178,051 - +0.8
178,116 - +0.9
178,116 - +0.1
178,134 + +1.5
178,134 + -1.0
178,134 + -1.1
178,135 - -0.5
178,135 - +0.1
178,135 - +0.5
178,136 + +0.6
178,201 - -1.4
178,265 + +0.5
178,298 - +0.4
178,353 + -1.0
178,353 + -0.2
178,355 + +0.1
178,355 + +1.0
178,355 + -0.0
178,355 + +1.3
178,355 + +0.3
178,356 - -0.4
178,356 - -1.6
178,364 + +1.3
178,415 - +0.2
178,420 + +0.8
178,485 + +0.9
178,883 + H281DRAFT_02055 0.67 -0.2
178,883 + H281DRAFT_02055 0.67 +0.2
178,884 - H281DRAFT_02055 0.67 -1.4
178,884 - H281DRAFT_02055 0.67 -0.9
178,884 - H281DRAFT_02055 0.67 -0.7
178,892 + H281DRAFT_02055 0.69 -0.3
179,072 + -0.7
179,072 - -0.7
179,082 + +0.3
179,082 + -0.4
179,082 + -0.4
179,083 - -0.1
179,083 - -0.0
179,104 + -0.2
179,188 + H281DRAFT_02056 0.26 -0.9
179,188 + H281DRAFT_02056 0.26 +0.9
179,188 + H281DRAFT_02056 0.26 +0.8
179,188 + H281DRAFT_02056 0.26 -0.0
179,189 - H281DRAFT_02056 0.27 +0.2
179,189 - H281DRAFT_02056 0.27 +0.5
179,189 - H281DRAFT_02056 0.27 -1.1
179,189 - H281DRAFT_02056 0.27 -0.7
179,189 - H281DRAFT_02056 0.27 -1.0
179,195 - H281DRAFT_02056 0.28 -0.1
179,320 + H281DRAFT_02056 0.67 +1.1
179,387 + +0.9
179,407 + +0.9
179,407 + -1.1
179,408 - -0.4
179,408 - -0.5
179,408 - +0.6
179,408 - -0.7
179,413 + +0.5
179,432 - +0.4
179,432 - -1.4
179,460 + -1.1
179,461 - -0.1
179,566 + -0.4
179,566 + +1.3
179,566 + -0.0
179,608 + -3.0
179,608 + +0.8
179,609 - -0.4
179,609 - -0.1
179,957 + H281DRAFT_02057 0.30 +0.7
179,958 - H281DRAFT_02057 0.30 +0.5
179,991 - H281DRAFT_02057 0.33 +0.1
179,991 - H281DRAFT_02057 0.33 +0.5
179,994 + H281DRAFT_02057 0.33 -1.2
179,994 + H281DRAFT_02057 0.33 +1.0
179,994 + H281DRAFT_02057 0.33 +0.3
179,994 + H281DRAFT_02057 0.33 +1.3
179,995 - H281DRAFT_02057 0.33 -0.2
179,995 - H281DRAFT_02057 0.33 +0.3

Or see this region's nucleotide sequence