Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02027

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02026 and H281DRAFT_02027 are separated by 656 nucleotidesH281DRAFT_02027 and H281DRAFT_02028 are separated by 372 nucleotides H281DRAFT_02026: H281DRAFT_02026 - DNA sulfur modification protein DndC, at 144,283 to 145,314 _02026 H281DRAFT_02027: H281DRAFT_02027 - transposase, at 145,971 to 146,321 _02027 H281DRAFT_02028: H281DRAFT_02028 - Transposase, at 146,694 to 148,286 _02028 Position (kb) 145 146 147Strain fitness (log2 ratio) -2 -1 0 1 2at 145.031 kb on + strand, within H281DRAFT_02026at 145.032 kb on - strand, within H281DRAFT_02026at 145.080 kb on + strand, within H281DRAFT_02026at 145.080 kb on + strand, within H281DRAFT_02026at 145.080 kb on + strand, within H281DRAFT_02026at 145.081 kb on - strand, within H281DRAFT_02026at 145.081 kb on - strand, within H281DRAFT_02026at 145.226 kb on + strandat 145.286 kb on + strandat 145.367 kb on + strandat 145.379 kb on + strandat 145.379 kb on + strandat 145.379 kb on + strandat 145.379 kb on + strandat 145.380 kb on - strandat 145.380 kb on - strandat 145.380 kb on - strandat 145.381 kb on + strandat 145.381 kb on + strandat 145.382 kb on - strandat 145.402 kb on + strandat 145.402 kb on + strandat 145.402 kb on + strandat 145.403 kb on - strandat 145.403 kb on - strandat 145.406 kb on + strandat 145.406 kb on + strandat 145.406 kb on + strandat 145.406 kb on + strandat 145.414 kb on - strandat 145.461 kb on + strandat 145.518 kb on - strandat 145.565 kb on + strandat 145.566 kb on - strandat 145.566 kb on - strandat 145.567 kb on + strandat 145.567 kb on + strandat 145.567 kb on + strandat 145.567 kb on + strandat 145.567 kb on + strandat 145.568 kb on - strandat 145.568 kb on - strandat 145.687 kb on - strandat 145.710 kb on + strandat 145.711 kb on - strandat 145.711 kb on - strandat 145.838 kb on + strandat 145.838 kb on + strandat 145.838 kb on + strandat 145.838 kb on + strandat 145.838 kb on + strandat 145.838 kb on + strandat 145.838 kb on + strandat 145.839 kb on - strandat 145.839 kb on - strandat 145.839 kb on - strandat 145.839 kb on - strandat 145.839 kb on - strandat 145.839 kb on - strandat 145.839 kb on - strandat 145.839 kb on - strandat 145.865 kb on + strandat 145.866 kb on - strandat 145.885 kb on + strandat 145.885 kb on + strandat 145.885 kb on + strandat 145.886 kb on - strandat 145.889 kb on - strandat 145.916 kb on + strandat 145.916 kb on + strandat 145.917 kb on - strandat 145.938 kb on + strandat 145.938 kb on + strandat 145.938 kb on + strandat 145.938 kb on + strandat 145.939 kb on - strandat 145.939 kb on - strandat 146.013 kb on + strand, within H281DRAFT_02027at 146.041 kb on + strand, within H281DRAFT_02027at 146.041 kb on + strandat 146.080 kb on + strand, within H281DRAFT_02027at 146.080 kb on + strand, within H281DRAFT_02027at 146.080 kb on + strand, within H281DRAFT_02027at 146.080 kb on + strand, within H281DRAFT_02027at 146.081 kb on - strand, within H281DRAFT_02027at 146.081 kb on - strand, within H281DRAFT_02027at 146.081 kb on - strand, within H281DRAFT_02027at 146.154 kb on - strand, within H281DRAFT_02027at 146.364 kb on + strandat 146.371 kb on + strandat 146.372 kb on - strandat 146.572 kb on + strandat 146.573 kb on - strandat 146.596 kb on - strandat 146.662 kb on + strandat 146.663 kb on - strandat 146.663 kb on - strandat 146.663 kb on - strandat 146.888 kb on + strand, within H281DRAFT_02028at 146.888 kb on + strand, within H281DRAFT_02028at 146.960 kb on + strand, within H281DRAFT_02028at 147.156 kb on + strand, within H281DRAFT_02028at 147.156 kb on + strand, within H281DRAFT_02028at 147.156 kb on + strand, within H281DRAFT_02028at 147.157 kb on - strand, within H281DRAFT_02028at 147.157 kb on - strand, within H281DRAFT_02028at 147.160 kb on + strand, within H281DRAFT_02028at 147.161 kb on - strand, within H281DRAFT_02028at 147.161 kb on - strand, within H281DRAFT_02028at 147.190 kb on + strand, within H281DRAFT_02028at 147.191 kb on - strand, within H281DRAFT_02028at 147.191 kb on - strand, within H281DRAFT_02028at 147.191 kb on - strand, within H281DRAFT_02028at 147.191 kb on - strand, within H281DRAFT_02028

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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145,031 + H281DRAFT_02026 0.72 +0.3
145,032 - H281DRAFT_02026 0.73 +0.5
145,080 + H281DRAFT_02026 0.77 -0.4
145,080 + H281DRAFT_02026 0.77 -0.0
145,080 + H281DRAFT_02026 0.77 +0.3
145,081 - H281DRAFT_02026 0.77 -0.8
145,081 - H281DRAFT_02026 0.77 +0.5
145,226 + +0.2
145,286 + -0.5
145,367 + -0.4
145,379 + +0.8
145,379 + -0.1
145,379 + +1.0
145,379 + -1.7
145,380 - +1.3
145,380 - +0.1
145,380 - -2.2
145,381 + +1.3
145,381 + -0.1
145,382 - +0.2
145,402 + -1.8
145,402 + +0.1
145,402 + -0.5
145,403 - +0.0
145,403 - +1.7
145,406 + +0.2
145,406 + -0.4
145,406 + +1.1
145,406 + +0.1
145,414 - +0.6
145,461 + +0.2
145,518 - +0.2
145,565 + +0.6
145,566 - +0.2
145,566 - +0.5
145,567 + +1.4
145,567 + -0.1
145,567 + -0.2
145,567 + -0.6
145,567 + -0.1
145,568 - +0.3
145,568 - -0.3
145,687 - +0.1
145,710 + +1.0
145,711 - +0.6
145,711 - -0.4
145,838 + +0.5
145,838 + -0.9
145,838 + +0.7
145,838 + +0.3
145,838 + +0.1
145,838 + +0.5
145,838 + +1.2
145,839 - +0.6
145,839 - -0.3
145,839 - -0.2
145,839 - +0.3
145,839 - -1.3
145,839 - +0.0
145,839 - +0.5
145,839 - +0.2
145,865 + +0.0
145,866 - -0.7
145,885 + -0.2
145,885 + +0.1
145,885 + +0.6
145,886 - -0.0
145,889 - +0.2
145,916 + +0.5
145,916 + +0.9
145,917 - -0.2
145,938 + +1.0
145,938 + +0.1
145,938 + -0.3
145,938 + -0.2
145,939 - -0.4
145,939 - +0.1
146,013 + H281DRAFT_02027 0.12 -0.3
146,041 + H281DRAFT_02027 0.20 +1.0
146,041 + +0.9
146,080 + H281DRAFT_02027 0.31 -0.1
146,080 + H281DRAFT_02027 0.31 -0.2
146,080 + H281DRAFT_02027 0.31 -2.1
146,080 + H281DRAFT_02027 0.31 -1.6
146,081 - H281DRAFT_02027 0.31 +0.3
146,081 - H281DRAFT_02027 0.31 -0.3
146,081 - H281DRAFT_02027 0.31 -0.2
146,154 - H281DRAFT_02027 0.52 -1.1
146,364 + +0.5
146,371 + -0.1
146,372 - +0.5
146,572 + +0.6
146,573 - -0.6
146,596 - +0.0
146,662 + +0.8
146,663 - +0.3
146,663 - -1.3
146,663 - -1.1
146,888 + H281DRAFT_02028 0.12 -0.1
146,888 + H281DRAFT_02028 0.12 +0.4
146,960 + H281DRAFT_02028 0.17 -0.5
147,156 + H281DRAFT_02028 0.29 +0.8
147,156 + H281DRAFT_02028 0.29 +0.9
147,156 + H281DRAFT_02028 0.29 -1.0
147,157 - H281DRAFT_02028 0.29 -0.2
147,157 - H281DRAFT_02028 0.29 +0.4
147,160 + H281DRAFT_02028 0.29 +0.5
147,161 - H281DRAFT_02028 0.29 +0.1
147,161 - H281DRAFT_02028 0.29 +1.9
147,190 + H281DRAFT_02028 0.31 +0.0
147,191 - H281DRAFT_02028 0.31 -0.1
147,191 - H281DRAFT_02028 0.31 +0.1
147,191 - H281DRAFT_02028 0.31 +0.5
147,191 - H281DRAFT_02028 0.31 -0.7

Or see this region's nucleotide sequence