Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01915

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01914 and H281DRAFT_01915 are separated by 58 nucleotidesH281DRAFT_01915 and H281DRAFT_01916 are separated by 384 nucleotides H281DRAFT_01914: H281DRAFT_01914 - Predicted PurR-regulated permease PerM, at 29,964 to 31,049 _01914 H281DRAFT_01915: H281DRAFT_01915 - iron complex outermembrane recepter protein, at 31,108 to 33,231 _01915 H281DRAFT_01916: H281DRAFT_01916 - Uncharacterized iron-regulated membrane protein, at 33,616 to 34,881 _01916 Position (kb) 31 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 30.173 kb on + strand, within H281DRAFT_01914at 30.174 kb on - strand, within H281DRAFT_01914at 30.174 kb on - strand, within H281DRAFT_01914at 30.174 kb on - strand, within H281DRAFT_01914at 30.200 kb on + strand, within H281DRAFT_01914at 30.200 kb on + strand, within H281DRAFT_01914at 30.200 kb on + strand, within H281DRAFT_01914at 30.201 kb on - strand, within H281DRAFT_01914at 30.201 kb on - strand, within H281DRAFT_01914at 30.631 kb on + strand, within H281DRAFT_01914at 30.883 kb on - strand, within H281DRAFT_01914at 31.011 kb on + strandat 31.012 kb on - strandat 31.012 kb on - strandat 31.058 kb on + strandat 31.058 kb on + strandat 31.109 kb on + strandat 31.110 kb on - strandat 31.110 kb on - strandat 31.110 kb on - strandat 31.173 kb on - strandat 31.178 kb on + strandat 31.256 kb on + strandat 31.370 kb on + strand, within H281DRAFT_01915at 31.371 kb on - strand, within H281DRAFT_01915at 31.383 kb on - strand, within H281DRAFT_01915at 31.457 kb on + strand, within H281DRAFT_01915at 31.564 kb on - strand, within H281DRAFT_01915at 31.564 kb on - strand, within H281DRAFT_01915at 31.564 kb on - strand, within H281DRAFT_01915at 31.566 kb on - strand, within H281DRAFT_01915at 31.566 kb on - strand, within H281DRAFT_01915at 31.710 kb on - strandat 31.751 kb on + strand, within H281DRAFT_01915at 31.760 kb on + strand, within H281DRAFT_01915at 31.830 kb on - strand, within H281DRAFT_01915at 31.875 kb on - strand, within H281DRAFT_01915at 31.875 kb on - strand, within H281DRAFT_01915at 31.979 kb on + strand, within H281DRAFT_01915at 31.979 kb on + strand, within H281DRAFT_01915at 31.979 kb on + strand, within H281DRAFT_01915at 31.980 kb on - strand, within H281DRAFT_01915at 31.982 kb on + strand, within H281DRAFT_01915at 31.983 kb on - strand, within H281DRAFT_01915at 31.983 kb on - strand, within H281DRAFT_01915at 32.021 kb on + strand, within H281DRAFT_01915at 32.021 kb on + strand, within H281DRAFT_01915at 32.021 kb on + strand, within H281DRAFT_01915at 32.022 kb on - strand, within H281DRAFT_01915at 32.022 kb on - strand, within H281DRAFT_01915at 32.022 kb on - strand, within H281DRAFT_01915at 32.087 kb on + strand, within H281DRAFT_01915at 32.088 kb on - strand, within H281DRAFT_01915at 32.088 kb on - strand, within H281DRAFT_01915at 32.088 kb on - strand, within H281DRAFT_01915at 32.088 kb on - strand, within H281DRAFT_01915at 32.101 kb on + strand, within H281DRAFT_01915at 32.229 kb on - strand, within H281DRAFT_01915at 32.229 kb on - strand, within H281DRAFT_01915at 32.229 kb on - strand, within H281DRAFT_01915at 32.229 kb on - strand, within H281DRAFT_01915at 32.229 kb on - strand, within H281DRAFT_01915at 32.231 kb on + strand, within H281DRAFT_01915at 32.231 kb on + strand, within H281DRAFT_01915at 32.231 kb on + strandat 32.231 kb on + strand, within H281DRAFT_01915at 32.231 kb on + strand, within H281DRAFT_01915at 32.232 kb on - strand, within H281DRAFT_01915at 32.232 kb on - strand, within H281DRAFT_01915at 32.232 kb on - strand, within H281DRAFT_01915at 32.235 kb on + strand, within H281DRAFT_01915at 32.235 kb on + strand, within H281DRAFT_01915at 32.236 kb on - strand, within H281DRAFT_01915at 32.236 kb on - strand, within H281DRAFT_01915at 32.267 kb on + strand, within H281DRAFT_01915at 32.267 kb on + strand, within H281DRAFT_01915at 32.274 kb on - strand, within H281DRAFT_01915at 32.274 kb on - strand, within H281DRAFT_01915at 32.274 kb on - strand, within H281DRAFT_01915at 32.274 kb on - strand, within H281DRAFT_01915at 32.274 kb on - strand, within H281DRAFT_01915at 32.309 kb on + strand, within H281DRAFT_01915at 32.309 kb on + strand, within H281DRAFT_01915at 32.310 kb on - strand, within H281DRAFT_01915at 32.310 kb on - strand, within H281DRAFT_01915at 32.327 kb on + strand, within H281DRAFT_01915at 32.390 kb on - strand, within H281DRAFT_01915at 32.406 kb on + strand, within H281DRAFT_01915at 32.418 kb on - strand, within H281DRAFT_01915at 32.418 kb on - strand, within H281DRAFT_01915at 32.468 kb on + strand, within H281DRAFT_01915at 32.469 kb on - strand, within H281DRAFT_01915at 32.469 kb on - strand, within H281DRAFT_01915at 32.469 kb on - strand, within H281DRAFT_01915at 32.469 kb on - strand, within H281DRAFT_01915at 32.469 kb on - strand, within H281DRAFT_01915at 32.470 kb on + strand, within H281DRAFT_01915at 32.559 kb on - strand, within H281DRAFT_01915at 32.650 kb on + strand, within H281DRAFT_01915at 32.650 kb on + strand, within H281DRAFT_01915at 32.650 kb on + strand, within H281DRAFT_01915at 32.650 kb on + strand, within H281DRAFT_01915at 32.663 kb on + strand, within H281DRAFT_01915at 32.663 kb on + strand, within H281DRAFT_01915at 32.664 kb on - strand, within H281DRAFT_01915at 32.664 kb on - strand, within H281DRAFT_01915at 32.664 kb on - strand, within H281DRAFT_01915at 32.666 kb on + strand, within H281DRAFT_01915at 32.687 kb on - strand, within H281DRAFT_01915at 32.723 kb on + strand, within H281DRAFT_01915at 32.724 kb on - strand, within H281DRAFT_01915at 32.757 kb on - strand, within H281DRAFT_01915at 32.757 kb on - strand, within H281DRAFT_01915at 32.825 kb on + strand, within H281DRAFT_01915at 32.825 kb on + strand, within H281DRAFT_01915at 32.825 kb on + strand, within H281DRAFT_01915at 32.825 kb on + strand, within H281DRAFT_01915at 32.825 kb on + strand, within H281DRAFT_01915at 32.825 kb on + strand, within H281DRAFT_01915at 32.826 kb on - strand, within H281DRAFT_01915at 32.826 kb on - strand, within H281DRAFT_01915at 32.897 kb on + strand, within H281DRAFT_01915at 32.898 kb on - strand, within H281DRAFT_01915at 32.898 kb on - strand, within H281DRAFT_01915at 32.898 kb on - strand, within H281DRAFT_01915at 32.898 kb on - strand, within H281DRAFT_01915at 32.898 kb on - strand, within H281DRAFT_01915at 32.898 kb on - strand, within H281DRAFT_01915at 32.915 kb on + strand, within H281DRAFT_01915at 33.324 kb on + strandat 33.342 kb on + strandat 33.425 kb on + strandat 33.516 kb on + strandat 33.835 kb on + strand, within H281DRAFT_01916at 33.835 kb on + strand, within H281DRAFT_01916at 33.835 kb on + strand, within H281DRAFT_01916at 33.836 kb on - strand, within H281DRAFT_01916at 33.836 kb on - strand, within H281DRAFT_01916at 33.836 kb on - strand, within H281DRAFT_01916at 33.836 kb on - strand, within H281DRAFT_01916at 33.864 kb on + strand, within H281DRAFT_01916at 33.916 kb on + strand, within H281DRAFT_01916at 33.916 kb on + strand, within H281DRAFT_01916at 34.027 kb on + strand, within H281DRAFT_01916at 34.027 kb on + strand, within H281DRAFT_01916at 34.027 kb on + strand, within H281DRAFT_01916at 34.028 kb on - strand, within H281DRAFT_01916at 34.039 kb on + strand, within H281DRAFT_01916at 34.040 kb on - strand, within H281DRAFT_01916at 34.040 kb on - strand, within H281DRAFT_01916at 34.161 kb on + strand, within H281DRAFT_01916at 34.161 kb on + strand, within H281DRAFT_01916at 34.161 kb on + strand, within H281DRAFT_01916at 34.161 kb on + strand, within H281DRAFT_01916at 34.162 kb on - strand, within H281DRAFT_01916at 34.162 kb on - strand, within H281DRAFT_01916at 34.204 kb on + strand, within H281DRAFT_01916

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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30,173 + H281DRAFT_01914 0.19 +0.7
30,174 - H281DRAFT_01914 0.19 -0.4
30,174 - H281DRAFT_01914 0.19 -1.5
30,174 - H281DRAFT_01914 0.19 -2.0
30,200 + H281DRAFT_01914 0.22 -1.4
30,200 + H281DRAFT_01914 0.22 -0.8
30,200 + H281DRAFT_01914 0.22 -0.4
30,201 - H281DRAFT_01914 0.22 +0.2
30,201 - H281DRAFT_01914 0.22 -0.1
30,631 + H281DRAFT_01914 0.61 -2.1
30,883 - H281DRAFT_01914 0.85 -1.9
31,011 + +0.1
31,012 - -3.1
31,012 - -0.2
31,058 + +0.6
31,058 + +1.0
31,109 + -0.2
31,110 - +0.9
31,110 - -0.1
31,110 - +1.3
31,173 - -0.3
31,178 + +0.5
31,256 + -0.0
31,370 + H281DRAFT_01915 0.12 +0.1
31,371 - H281DRAFT_01915 0.12 -0.4
31,383 - H281DRAFT_01915 0.13 -1.1
31,457 + H281DRAFT_01915 0.16 -0.3
31,564 - H281DRAFT_01915 0.21 -0.6
31,564 - H281DRAFT_01915 0.21 +0.1
31,564 - H281DRAFT_01915 0.21 +0.5
31,566 - H281DRAFT_01915 0.22 +0.2
31,566 - H281DRAFT_01915 0.22 +0.2
31,710 - +1.9
31,751 + H281DRAFT_01915 0.30 +0.4
31,760 + H281DRAFT_01915 0.31 -0.1
31,830 - H281DRAFT_01915 0.34 -0.1
31,875 - H281DRAFT_01915 0.36 +0.5
31,875 - H281DRAFT_01915 0.36 -0.2
31,979 + H281DRAFT_01915 0.41 +0.6
31,979 + H281DRAFT_01915 0.41 +0.9
31,979 + H281DRAFT_01915 0.41 +0.7
31,980 - H281DRAFT_01915 0.41 +0.3
31,982 + H281DRAFT_01915 0.41 -0.4
31,983 - H281DRAFT_01915 0.41 +0.5
31,983 - H281DRAFT_01915 0.41 -0.3
32,021 + H281DRAFT_01915 0.43 +1.0
32,021 + H281DRAFT_01915 0.43 -1.1
32,021 + H281DRAFT_01915 0.43 -0.8
32,022 - H281DRAFT_01915 0.43 +1.3
32,022 - H281DRAFT_01915 0.43 +0.6
32,022 - H281DRAFT_01915 0.43 +0.2
32,087 + H281DRAFT_01915 0.46 +0.8
32,088 - H281DRAFT_01915 0.46 +0.3
32,088 - H281DRAFT_01915 0.46 +1.2
32,088 - H281DRAFT_01915 0.46 +1.0
32,088 - H281DRAFT_01915 0.46 -1.3
32,101 + H281DRAFT_01915 0.47 +0.6
32,229 - H281DRAFT_01915 0.53 +0.0
32,229 - H281DRAFT_01915 0.53 -0.1
32,229 - H281DRAFT_01915 0.53 -1.0
32,229 - H281DRAFT_01915 0.53 -2.0
32,229 - H281DRAFT_01915 0.53 -0.0
32,231 + H281DRAFT_01915 0.53 -0.2
32,231 + H281DRAFT_01915 0.53 -0.8
32,231 + +0.3
32,231 + H281DRAFT_01915 0.53 -0.1
32,231 + H281DRAFT_01915 0.53 +0.7
32,232 - H281DRAFT_01915 0.53 -1.4
32,232 - H281DRAFT_01915 0.53 -0.5
32,232 - H281DRAFT_01915 0.53 -0.7
32,235 + H281DRAFT_01915 0.53 +0.1
32,235 + H281DRAFT_01915 0.53 +0.9
32,236 - H281DRAFT_01915 0.53 -0.2
32,236 - H281DRAFT_01915 0.53 -1.4
32,267 + H281DRAFT_01915 0.55 +0.7
32,267 + H281DRAFT_01915 0.55 +1.1
32,274 - H281DRAFT_01915 0.55 -0.9
32,274 - H281DRAFT_01915 0.55 -2.9
32,274 - H281DRAFT_01915 0.55 -0.0
32,274 - H281DRAFT_01915 0.55 -0.4
32,274 - H281DRAFT_01915 0.55 -0.2
32,309 + H281DRAFT_01915 0.57 +0.6
32,309 + H281DRAFT_01915 0.57 +1.1
32,310 - H281DRAFT_01915 0.57 -0.5
32,310 - H281DRAFT_01915 0.57 +0.8
32,327 + H281DRAFT_01915 0.57 +0.2
32,390 - H281DRAFT_01915 0.60 -0.4
32,406 + H281DRAFT_01915 0.61 -0.3
32,418 - H281DRAFT_01915 0.62 -0.4
32,418 - H281DRAFT_01915 0.62 -0.0
32,468 + H281DRAFT_01915 0.64 +0.5
32,469 - H281DRAFT_01915 0.64 -1.4
32,469 - H281DRAFT_01915 0.64 -0.8
32,469 - H281DRAFT_01915 0.64 -0.6
32,469 - H281DRAFT_01915 0.64 -0.2
32,469 - H281DRAFT_01915 0.64 +0.7
32,470 + H281DRAFT_01915 0.64 +0.4
32,559 - H281DRAFT_01915 0.68 -0.2
32,650 + H281DRAFT_01915 0.73 +1.2
32,650 + H281DRAFT_01915 0.73 +1.4
32,650 + H281DRAFT_01915 0.73 +0.4
32,650 + H281DRAFT_01915 0.73 +0.4
32,663 + H281DRAFT_01915 0.73 +2.1
32,663 + H281DRAFT_01915 0.73 +0.4
32,664 - H281DRAFT_01915 0.73 -0.7
32,664 - H281DRAFT_01915 0.73 +0.0
32,664 - H281DRAFT_01915 0.73 +0.7
32,666 + H281DRAFT_01915 0.73 -0.1
32,687 - H281DRAFT_01915 0.74 +0.2
32,723 + H281DRAFT_01915 0.76 -0.1
32,724 - H281DRAFT_01915 0.76 -0.6
32,757 - H281DRAFT_01915 0.78 +0.1
32,757 - H281DRAFT_01915 0.78 +0.1
32,825 + H281DRAFT_01915 0.81 +0.0
32,825 + H281DRAFT_01915 0.81 +0.6
32,825 + H281DRAFT_01915 0.81 +0.7
32,825 + H281DRAFT_01915 0.81 +0.4
32,825 + H281DRAFT_01915 0.81 +0.9
32,825 + H281DRAFT_01915 0.81 +0.1
32,826 - H281DRAFT_01915 0.81 -1.0
32,826 - H281DRAFT_01915 0.81 +0.1
32,897 + H281DRAFT_01915 0.84 +2.1
32,898 - H281DRAFT_01915 0.84 +0.4
32,898 - H281DRAFT_01915 0.84 +0.9
32,898 - H281DRAFT_01915 0.84 +1.5
32,898 - H281DRAFT_01915 0.84 +0.2
32,898 - H281DRAFT_01915 0.84 -0.4
32,898 - H281DRAFT_01915 0.84 +0.1
32,915 + H281DRAFT_01915 0.85 +1.5
33,324 + +0.6
33,342 + +0.1
33,425 + +0.2
33,516 + +0.5
33,835 + H281DRAFT_01916 0.17 +0.4
33,835 + H281DRAFT_01916 0.17 -0.2
33,835 + H281DRAFT_01916 0.17 +1.1
33,836 - H281DRAFT_01916 0.17 +0.1
33,836 - H281DRAFT_01916 0.17 +0.9
33,836 - H281DRAFT_01916 0.17 +1.7
33,836 - H281DRAFT_01916 0.17 +0.0
33,864 + H281DRAFT_01916 0.20 -0.2
33,916 + H281DRAFT_01916 0.24 -0.4
33,916 + H281DRAFT_01916 0.24 +0.1
34,027 + H281DRAFT_01916 0.32 -0.5
34,027 + H281DRAFT_01916 0.32 -0.1
34,027 + H281DRAFT_01916 0.32 +0.3
34,028 - H281DRAFT_01916 0.33 +1.1
34,039 + H281DRAFT_01916 0.33 +1.0
34,040 - H281DRAFT_01916 0.33 -1.1
34,040 - H281DRAFT_01916 0.33 +0.4
34,161 + H281DRAFT_01916 0.43 -0.3
34,161 + H281DRAFT_01916 0.43 -2.6
34,161 + H281DRAFT_01916 0.43 -0.6
34,161 + H281DRAFT_01916 0.43 -0.0
34,162 - H281DRAFT_01916 0.43 +0.3
34,162 - H281DRAFT_01916 0.43 -0.9
34,204 + H281DRAFT_01916 0.46 -0.3

Or see this region's nucleotide sequence