Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01550

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01549 and H281DRAFT_01550 are separated by 79 nucleotidesH281DRAFT_01550 and H281DRAFT_01551 are separated by 36 nucleotides H281DRAFT_01549: H281DRAFT_01549 - MFS transporter, DHA2 family, multidrug resistance protein, at 421,403 to 422,962 _01549 H281DRAFT_01550: H281DRAFT_01550 - membrane fusion protein, multidrug efflux system, at 423,042 to 424,289 _01550 H281DRAFT_01551: H281DRAFT_01551 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 424,326 to 425,819 _01551 Position (kb) 423 424 425Strain fitness (log2 ratio) -1 0 1at 422.379 kb on + strand, within H281DRAFT_01549at 422.687 kb on + strand, within H281DRAFT_01549at 423.178 kb on + strand, within H281DRAFT_01550at 423.182 kb on + strand, within H281DRAFT_01550at 423.412 kb on + strand, within H281DRAFT_01550at 423.893 kb on - strand, within H281DRAFT_01550at 423.893 kb on - strand, within H281DRAFT_01550at 423.895 kb on + strand, within H281DRAFT_01550at 424.100 kb on - strand, within H281DRAFT_01550at 424.100 kb on - strand, within H281DRAFT_01550at 424.142 kb on - strand, within H281DRAFT_01550at 424.144 kb on + strand, within H281DRAFT_01550at 424.703 kb on + strand, within H281DRAFT_01551at 424.847 kb on - strand, within H281DRAFT_01551

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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422,379 + H281DRAFT_01549 0.63 +0.2
422,687 + H281DRAFT_01549 0.82 -1.0
423,178 + H281DRAFT_01550 0.11 +0.5
423,182 + H281DRAFT_01550 0.11 +0.1
423,412 + H281DRAFT_01550 0.30 -1.3
423,893 - H281DRAFT_01550 0.68 +0.9
423,893 - H281DRAFT_01550 0.68 +0.9
423,895 + H281DRAFT_01550 0.68 +0.8
424,100 - H281DRAFT_01550 0.85 +1.0
424,100 - H281DRAFT_01550 0.85 -0.8
424,142 - H281DRAFT_01550 0.88 -0.1
424,144 + H281DRAFT_01550 0.88 +0.2
424,703 + H281DRAFT_01551 0.25 +0.1
424,847 - H281DRAFT_01551 0.35 -0.8

Or see this region's nucleotide sequence