Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01371 and H281DRAFT_01372 are separated by 107 nucleotides H281DRAFT_01372 and H281DRAFT_01373 overlap by 4 nucleotides H281DRAFT_01373 and H281DRAFT_01374 are separated by 307 nucleotides
H281DRAFT_01371: H281DRAFT_01371 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 215,951 to 217,294
_01371
H281DRAFT_01372: H281DRAFT_01372 - protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8), at 217,402 to 217,761
_01372
H281DRAFT_01373: H281DRAFT_01373 - protocatechuate 4,5-dioxygenase beta subunit (EC 1.13.11.8), at 217,758 to 218,603
_01373
H281DRAFT_01374: H281DRAFT_01374 - transcriptional regulator, GntR family, at 218,911 to 219,705
_01374
Position (kb) 217
218
219 Strain fitness (log2 ratio) -1
0
1 at 217.470 kb on - strand, within H281DRAFT_01372 at 217.514 kb on - strand, within H281DRAFT_01372 at 217.718 kb on + strand, within H281DRAFT_01372 at 217.915 kb on + strand, within H281DRAFT_01373 at 218.463 kb on - strand, within H281DRAFT_01373 at 218.494 kb on + strand, within H281DRAFT_01373 at 218.534 kb on + strand at 218.546 kb on - strand at 218.559 kb on - strand at 218.773 kb on - strand at 218.909 kb on - strand at 219.199 kb on - strand at 219.201 kb on - strand, within H281DRAFT_01374 at 219.227 kb on + strand, within H281DRAFT_01374 at 219.554 kb on - strand, within H281DRAFT_01374
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C) remove 217,470 - H281DRAFT_01372 0.19 +0.1 217,514 - H281DRAFT_01372 0.31 +0.0 217,718 + H281DRAFT_01372 0.88 +1.2 217,915 + H281DRAFT_01373 0.19 +1.2 218,463 - H281DRAFT_01373 0.83 +0.0 218,494 + H281DRAFT_01373 0.87 +0.6 218,534 + +1.5 218,546 - -0.5 218,559 - +1.1 218,773 - -0.0 218,909 - +0.0 219,199 - +0.5 219,201 - H281DRAFT_01374 0.36 -0.8 219,227 + H281DRAFT_01374 0.40 +0.8 219,554 - H281DRAFT_01374 0.81 +0.4
Or see this region's nucleotide sequence