Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01226

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01224 and H281DRAFT_01225 are separated by 42 nucleotidesH281DRAFT_01225 and H281DRAFT_01226 are separated by 127 nucleotidesH281DRAFT_01226 and H281DRAFT_01227 are separated by 15 nucleotidesH281DRAFT_01227 and H281DRAFT_01228 are separated by 39 nucleotides H281DRAFT_01224: H281DRAFT_01224 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 62,678 to 63,571 _01224 H281DRAFT_01225: H281DRAFT_01225 - L-rhamnose mutarotase, at 63,614 to 63,937 _01225 H281DRAFT_01226: H281DRAFT_01226 - transcriptional regulator, LysR family, at 64,065 to 65,060 _01226 H281DRAFT_01227: H281DRAFT_01227 - L-rhamnose 1-dehydrogenase, at 65,076 to 65,858 _01227 H281DRAFT_01228: H281DRAFT_01228 - L-rhamnonate dehydratase, at 65,898 to 67,076 _01228 Position (kb) 64 65 66Strain fitness (log2 ratio) -1 0 1at 63.683 kb on - strand, within H281DRAFT_01225at 63.703 kb on - strand, within H281DRAFT_01225at 63.993 kb on - strandat 63.993 kb on - strandat 65.372 kb on - strand, within H281DRAFT_01227at 65.480 kb on - strand, within H281DRAFT_01227at 65.623 kb on - strand, within H281DRAFT_01227

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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63,683 - H281DRAFT_01225 0.21 +0.8
63,703 - H281DRAFT_01225 0.27 -0.2
63,993 - +0.2
63,993 - +0.4
65,372 - H281DRAFT_01227 0.38 +0.8
65,480 - H281DRAFT_01227 0.52 -1.6
65,623 - H281DRAFT_01227 0.70 -0.3

Or see this region's nucleotide sequence