Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01119

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01118 and H281DRAFT_01119 are separated by 249 nucleotidesH281DRAFT_01119 and H281DRAFT_01120 overlap by 4 nucleotides H281DRAFT_01118: H281DRAFT_01118 - deoxyribose-phosphate aldolase, at 1,259,733 to 1,260,746 _01118 H281DRAFT_01119: H281DRAFT_01119 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 1,260,996 to 1,262,627 _01119 H281DRAFT_01120: H281DRAFT_01120 - monosaccharide ABC transporter membrane protein, CUT2 family, at 1,262,624 to 1,263,625 _01120 Position (kb) 1260 1261 1262 1263Strain fitness (log2 ratio) -2 -1 0 1at 1260.206 kb on - strand, within H281DRAFT_01118at 1260.379 kb on + strand, within H281DRAFT_01118at 1260.804 kb on + strandat 1261.194 kb on + strand, within H281DRAFT_01119at 1261.282 kb on - strand, within H281DRAFT_01119at 1261.614 kb on + strand, within H281DRAFT_01119at 1261.615 kb on - strand, within H281DRAFT_01119at 1261.853 kb on + strand, within H281DRAFT_01119at 1261.853 kb on + strand, within H281DRAFT_01119at 1262.391 kb on + strand, within H281DRAFT_01119at 1262.461 kb on + strand, within H281DRAFT_01119at 1262.739 kb on - strand, within H281DRAFT_01120at 1263.240 kb on - strand, within H281DRAFT_01120at 1263.240 kb on - strand, within H281DRAFT_01120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
remove
1,260,206 - H281DRAFT_01118 0.47 -1.4
1,260,379 + H281DRAFT_01118 0.64 -1.3
1,260,804 + -2.6
1,261,194 + H281DRAFT_01119 0.12 -1.4
1,261,282 - H281DRAFT_01119 0.18 +0.4
1,261,614 + H281DRAFT_01119 0.38 -0.3
1,261,615 - H281DRAFT_01119 0.38 -1.2
1,261,853 + H281DRAFT_01119 0.53 -0.4
1,261,853 + H281DRAFT_01119 0.53 -1.6
1,262,391 + H281DRAFT_01119 0.85 -0.7
1,262,461 + H281DRAFT_01119 0.90 -0.2
1,262,739 - H281DRAFT_01120 0.11 -0.1
1,263,240 - H281DRAFT_01120 0.61 -2.1
1,263,240 - H281DRAFT_01120 0.61 -1.9

Or see this region's nucleotide sequence