Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00928

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00927 and H281DRAFT_00928 overlap by 1 nucleotidesH281DRAFT_00928 and H281DRAFT_00929 are separated by 95 nucleotides H281DRAFT_00927: H281DRAFT_00927 - UPF0755 protein, at 1,031,087 to 1,032,097 _00927 H281DRAFT_00928: H281DRAFT_00928 - thymidylate kinase, at 1,032,097 to 1,032,717 _00928 H281DRAFT_00929: H281DRAFT_00929 - DNA polymerase III, delta prime subunit, at 1,032,813 to 1,033,847 _00929 Position (kb) 1032 1033Strain fitness (log2 ratio) -1 0 1 2at 1031.414 kb on + strand, within H281DRAFT_00927at 1031.588 kb on + strand, within H281DRAFT_00927at 1031.624 kb on + strand, within H281DRAFT_00927at 1031.624 kb on + strand, within H281DRAFT_00927at 1031.696 kb on + strand, within H281DRAFT_00927at 1031.708 kb on + strand, within H281DRAFT_00927at 1031.709 kb on - strand, within H281DRAFT_00927at 1031.840 kb on + strand, within H281DRAFT_00927at 1031.908 kb on + strand, within H281DRAFT_00927at 1031.912 kb on + strand, within H281DRAFT_00927at 1031.914 kb on + strand, within H281DRAFT_00927at 1031.941 kb on + strand, within H281DRAFT_00927at 1031.941 kb on + strand, within H281DRAFT_00927at 1031.941 kb on + strand, within H281DRAFT_00927at 1032.080 kb on + strandat 1032.080 kb on + strandat 1032.731 kb on + strandat 1032.775 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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1,031,414 + H281DRAFT_00927 0.32 +0.7
1,031,588 + H281DRAFT_00927 0.50 -1.0
1,031,624 + H281DRAFT_00927 0.53 +1.5
1,031,624 + H281DRAFT_00927 0.53 +0.3
1,031,696 + H281DRAFT_00927 0.60 +1.1
1,031,708 + H281DRAFT_00927 0.61 +0.8
1,031,709 - H281DRAFT_00927 0.62 -0.1
1,031,840 + H281DRAFT_00927 0.74 +1.5
1,031,908 + H281DRAFT_00927 0.81 +0.9
1,031,912 + H281DRAFT_00927 0.82 +1.7
1,031,914 + H281DRAFT_00927 0.82 +1.4
1,031,941 + H281DRAFT_00927 0.84 +2.2
1,031,941 + H281DRAFT_00927 0.84 +0.6
1,031,941 + H281DRAFT_00927 0.84 +1.2
1,032,080 + +0.3
1,032,080 + -0.3
1,032,731 + +0.2
1,032,775 + +0.2

Or see this region's nucleotide sequence