Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00925

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00924 and H281DRAFT_00925 are separated by 3 nucleotidesH281DRAFT_00925 and H281DRAFT_00926 are separated by 121 nucleotides H281DRAFT_00924: H281DRAFT_00924 - acetyl esterase, at 1,027,910 to 1,028,866 _00924 H281DRAFT_00925: H281DRAFT_00925 - Uncharacterized conserved protein, contains NRDE domain, at 1,028,870 to 1,029,751 _00925 H281DRAFT_00926: H281DRAFT_00926 - hypothetical protein, at 1,029,873 to 1,031,009 _00926 Position (kb) 1028 1029 1030Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1027.882 kb on - strandat 1027.882 kb on - strandat 1027.892 kb on + strandat 1027.893 kb on - strandat 1027.898 kb on + strandat 1027.898 kb on + strandat 1028.114 kb on + strand, within H281DRAFT_00924at 1028.162 kb on + strand, within H281DRAFT_00924at 1028.162 kb on + strand, within H281DRAFT_00924at 1028.162 kb on + strand, within H281DRAFT_00924at 1028.162 kb on + strand, within H281DRAFT_00924at 1028.162 kb on + strand, within H281DRAFT_00924at 1028.163 kb on - strand, within H281DRAFT_00924at 1028.165 kb on + strand, within H281DRAFT_00924at 1028.201 kb on - strand, within H281DRAFT_00924at 1028.571 kb on - strand, within H281DRAFT_00924at 1028.571 kb on - strand, within H281DRAFT_00924at 1028.681 kb on + strand, within H281DRAFT_00924at 1028.711 kb on + strand, within H281DRAFT_00924at 1028.865 kb on - strandat 1028.999 kb on + strand, within H281DRAFT_00925at 1029.000 kb on - strand, within H281DRAFT_00925at 1029.031 kb on - strand, within H281DRAFT_00925at 1029.266 kb on - strand, within H281DRAFT_00925at 1029.287 kb on - strand, within H281DRAFT_00925at 1029.354 kb on + strand, within H281DRAFT_00925at 1029.354 kb on + strand, within H281DRAFT_00925at 1029.354 kb on + strand, within H281DRAFT_00925at 1029.355 kb on - strand, within H281DRAFT_00925at 1029.355 kb on - strand, within H281DRAFT_00925at 1029.355 kb on - strand, within H281DRAFT_00925at 1029.387 kb on + strand, within H281DRAFT_00925at 1029.388 kb on - strand, within H281DRAFT_00925at 1029.388 kb on - strand, within H281DRAFT_00925at 1029.388 kb on - strand, within H281DRAFT_00925at 1029.541 kb on - strand, within H281DRAFT_00925at 1029.541 kb on - strand, within H281DRAFT_00925at 1029.743 kb on + strandat 1029.743 kb on + strandat 1029.743 kb on + strandat 1029.744 kb on - strandat 1029.744 kb on - strandat 1029.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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1,027,882 - -0.7
1,027,882 - -0.8
1,027,892 + +0.4
1,027,893 - +1.2
1,027,898 + +0.4
1,027,898 + -0.3
1,028,114 + H281DRAFT_00924 0.21 -3.8
1,028,162 + H281DRAFT_00924 0.26 -1.9
1,028,162 + H281DRAFT_00924 0.26 +1.1
1,028,162 + H281DRAFT_00924 0.26 +1.1
1,028,162 + H281DRAFT_00924 0.26 -0.4
1,028,162 + H281DRAFT_00924 0.26 +0.2
1,028,163 - H281DRAFT_00924 0.26 -0.2
1,028,165 + H281DRAFT_00924 0.27 +0.2
1,028,201 - H281DRAFT_00924 0.30 -0.1
1,028,571 - H281DRAFT_00924 0.69 -2.8
1,028,571 - H281DRAFT_00924 0.69 -1.3
1,028,681 + H281DRAFT_00924 0.81 -0.3
1,028,711 + H281DRAFT_00924 0.84 -0.3
1,028,865 - +0.4
1,028,999 + H281DRAFT_00925 0.15 -0.2
1,029,000 - H281DRAFT_00925 0.15 +1.0
1,029,031 - H281DRAFT_00925 0.18 -0.3
1,029,266 - H281DRAFT_00925 0.45 -0.0
1,029,287 - H281DRAFT_00925 0.47 -0.0
1,029,354 + H281DRAFT_00925 0.55 +0.2
1,029,354 + H281DRAFT_00925 0.55 +0.3
1,029,354 + H281DRAFT_00925 0.55 +1.0
1,029,355 - H281DRAFT_00925 0.55 +0.5
1,029,355 - H281DRAFT_00925 0.55 +0.2
1,029,355 - H281DRAFT_00925 0.55 -1.1
1,029,387 + H281DRAFT_00925 0.59 -1.6
1,029,388 - H281DRAFT_00925 0.59 -0.4
1,029,388 - H281DRAFT_00925 0.59 +1.0
1,029,388 - H281DRAFT_00925 0.59 -0.4
1,029,541 - H281DRAFT_00925 0.76 +0.2
1,029,541 - H281DRAFT_00925 0.76 -0.8
1,029,743 + -0.7
1,029,743 + +0.1
1,029,743 + -0.3
1,029,744 - -0.7
1,029,744 - +0.7
1,029,744 - -0.6

Or see this region's nucleotide sequence