Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00491

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00490 and H281DRAFT_00491 overlap by 8 nucleotidesH281DRAFT_00491 and H281DRAFT_00492 are separated by 93 nucleotides H281DRAFT_00490: H281DRAFT_00490 - lipoprotein-releasing system permease protein, at 549,398 to 550,651 _00490 H281DRAFT_00491: H281DRAFT_00491 - lipoprotein-releasing system ATP-binding protein, at 550,644 to 551,387 _00491 H281DRAFT_00492: H281DRAFT_00492 - TatD DNase family protein, at 551,481 to 552,269 _00492 Position (kb) 550 551 552Strain fitness (log2 ratio) -3 -2 -1 0 1at 551.385 kb on + strandat 551.447 kb on - strandat 551.447 kb on - strandat 551.781 kb on + strand, within H281DRAFT_00492at 551.781 kb on + strand, within H281DRAFT_00492at 551.782 kb on - strand, within H281DRAFT_00492at 551.824 kb on - strand, within H281DRAFT_00492at 551.836 kb on + strand, within H281DRAFT_00492at 551.837 kb on - strand, within H281DRAFT_00492at 551.899 kb on + strand, within H281DRAFT_00492at 551.979 kb on + strand, within H281DRAFT_00492at 551.980 kb on - strand, within H281DRAFT_00492at 551.980 kb on - strand, within H281DRAFT_00492at 551.980 kb on - strand, within H281DRAFT_00492at 551.982 kb on - strand, within H281DRAFT_00492at 551.993 kb on + strand, within H281DRAFT_00492at 552.124 kb on - strand, within H281DRAFT_00492at 552.124 kb on - strand, within H281DRAFT_00492at 552.124 kb on - strand, within H281DRAFT_00492at 552.211 kb on + strandat 552.267 kb on + strandat 552.267 kb on + strandat 552.267 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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551,385 + +0.7
551,447 - -0.4
551,447 - +1.7
551,781 + H281DRAFT_00492 0.38 +0.3
551,781 + H281DRAFT_00492 0.38 +1.3
551,782 - H281DRAFT_00492 0.38 +0.2
551,824 - H281DRAFT_00492 0.43 +0.4
551,836 + H281DRAFT_00492 0.45 -0.1
551,837 - H281DRAFT_00492 0.45 +0.5
551,899 + H281DRAFT_00492 0.53 +0.2
551,979 + H281DRAFT_00492 0.63 -0.1
551,980 - H281DRAFT_00492 0.63 +0.0
551,980 - H281DRAFT_00492 0.63 +0.8
551,980 - H281DRAFT_00492 0.63 -0.1
551,982 - H281DRAFT_00492 0.63 -0.5
551,993 + H281DRAFT_00492 0.65 +1.5
552,124 - H281DRAFT_00492 0.81 -0.5
552,124 - H281DRAFT_00492 0.81 -3.1
552,124 - H281DRAFT_00492 0.81 +0.4
552,211 + +0.2
552,267 + -0.1
552,267 + -0.8
552,267 + +1.5

Or see this region's nucleotide sequence