Strain Fitness in Dechlorosoma suillum PS around Dsui_3458

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3457 and Dsui_3458 are separated by 308 nucleotidesDsui_3458 and Dsui_3459 are separated by 46 nucleotidesDsui_3459 and Dsui_3460 are separated by 1 nucleotides Dsui_3457: Dsui_3457 - K+ transporter, at 3,719,036 to 3,720,919 _3457 Dsui_3458: Dsui_3458 - septum site-determining protein MinC, at 3,721,228 to 3,722,064 _3458 Dsui_3459: Dsui_3459 - septum site-determining protein MinD, at 3,722,111 to 3,722,923 _3459 Dsui_3460: Dsui_3460 - cell division topological specificity factor MinE, at 3,722,925 to 3,723,191 _3460 Position (kb) 3721 3722 3723Strain fitness (log2 ratio) -2 -1 0 1 2at 3720.235 kb on - strand, within Dsui_3457at 3721.072 kb on + strandat 3721.173 kb on + strandat 3721.181 kb on - strandat 3721.233 kb on - strandat 3721.502 kb on - strand, within Dsui_3458at 3721.636 kb on + strand, within Dsui_3458at 3721.770 kb on + strand, within Dsui_3458at 3721.827 kb on + strand, within Dsui_3458at 3721.874 kb on - strandat 3721.967 kb on + strand, within Dsui_3458at 3722.050 kb on + strandat 3722.057 kb on - strandat 3722.057 kb on - strandat 3722.083 kb on + strandat 3722.083 kb on + strandat 3722.083 kb on + strandat 3722.083 kb on + strandat 3722.091 kb on - strandat 3722.091 kb on - strandat 3722.184 kb on + strandat 3722.186 kb on - strandat 3722.192 kb on - strandat 3722.241 kb on + strand, within Dsui_3459at 3722.241 kb on + strand, within Dsui_3459at 3722.249 kb on - strandat 3722.346 kb on + strand, within Dsui_3459at 3722.444 kb on + strand, within Dsui_3459at 3722.590 kb on + strand, within Dsui_3459at 3722.649 kb on + strand, within Dsui_3459at 3722.649 kb on - strandat 3722.691 kb on + strand, within Dsui_3459at 3722.766 kb on + strand, within Dsui_3459at 3722.861 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
remove
3,720,235 - Dsui_3457 0.64 -0.4
3,721,072 + -0.7
3,721,173 + -1.8
3,721,181 - -0.8
3,721,233 - -0.2
3,721,502 - Dsui_3458 0.33 -1.6
3,721,636 + Dsui_3458 0.49 +0.2
3,721,770 + Dsui_3458 0.65 +0.3
3,721,827 + Dsui_3458 0.72 -0.1
3,721,874 - -2.6
3,721,967 + Dsui_3458 0.88 -1.3
3,722,050 + +0.9
3,722,057 - -0.1
3,722,057 - +1.3
3,722,083 + +1.0
3,722,083 + +0.4
3,722,083 + +0.8
3,722,083 + +0.5
3,722,091 - -0.7
3,722,091 - +0.4
3,722,184 + -1.3
3,722,186 - -0.5
3,722,192 - -0.6
3,722,241 + Dsui_3459 0.16 +0.1
3,722,241 + Dsui_3459 0.16 +2.5
3,722,249 - -0.9
3,722,346 + Dsui_3459 0.29 +0.4
3,722,444 + Dsui_3459 0.41 -0.2
3,722,590 + Dsui_3459 0.59 +0.3
3,722,649 + Dsui_3459 0.66 -0.0
3,722,649 - -0.4
3,722,691 + Dsui_3459 0.71 +1.9
3,722,766 + Dsui_3459 0.81 +0.9
3,722,861 + +1.0

Or see this region's nucleotide sequence