Strain Fitness in Dechlorosoma suillum PS around Dsui_3381

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3379 and Dsui_3380 overlap by 11 nucleotidesDsui_3380 and Dsui_3381 are separated by 79 nucleotidesDsui_3381 and Dsui_3382 are separated by 382 nucleotides Dsui_3379: Dsui_3379 - S-methyl-5-thioribose-1-phosphate isomerase, at 3,621,488 to 3,622,579 _3379 Dsui_3380: Dsui_3380 - ribulose-5-phosphate 4-epimerase-like epimerase or aldolase, at 3,622,569 to 3,623,219 _3380 Dsui_3381: Dsui_3381 - hypothetical protein, at 3,623,299 to 3,623,874 _3381 Dsui_3382: Dsui_3382 - universal stress protein UspA-like protein, at 3,624,257 to 3,625,168 _3382 Position (kb) 3623 3624Strain fitness (log2 ratio) -1 0 1 2at 3622.368 kb on - strandat 3622.559 kb on + strandat 3622.618 kb on - strandat 3622.721 kb on - strand, within Dsui_3380at 3622.781 kb on + strand, within Dsui_3380at 3622.825 kb on - strandat 3622.962 kb on - strand, within Dsui_3380at 3622.985 kb on - strand, within Dsui_3380at 3622.985 kb on - strandat 3622.986 kb on - strand, within Dsui_3380at 3623.026 kb on - strand, within Dsui_3380at 3623.027 kb on - strand, within Dsui_3380at 3623.027 kb on - strand, within Dsui_3380at 3623.039 kb on - strand, within Dsui_3380at 3623.062 kb on + strandat 3623.128 kb on - strand, within Dsui_3380at 3623.169 kb on - strandat 3623.174 kb on - strandat 3623.183 kb on - strandat 3623.184 kb on - strandat 3623.213 kb on + strandat 3623.282 kb on - strandat 3623.333 kb on - strandat 3623.371 kb on - strand, within Dsui_3381at 3623.423 kb on - strand, within Dsui_3381at 3623.460 kb on - strand, within Dsui_3381at 3623.479 kb on + strand, within Dsui_3381at 3623.590 kb on - strand, within Dsui_3381at 3623.618 kb on - strand, within Dsui_3381at 3623.635 kb on - strand, within Dsui_3381at 3623.642 kb on + strandat 3623.706 kb on + strandat 3623.706 kb on + strandat 3623.714 kb on - strand, within Dsui_3381at 3623.728 kb on + strand, within Dsui_3381at 3623.741 kb on - strand, within Dsui_3381at 3623.760 kb on - strand, within Dsui_3381at 3623.887 kb on + strandat 3623.887 kb on + strandat 3623.887 kb on + strandat 3623.895 kb on - strandat 3624.018 kb on + strandat 3624.062 kb on + strandat 3624.062 kb on + strandat 3624.070 kb on - strandat 3624.070 kb on - strandat 3624.072 kb on - strandat 3624.270 kb on + strandat 3624.324 kb on - strandat 3624.365 kb on - strand, within Dsui_3382at 3624.393 kb on - strand, within Dsui_3382at 3624.518 kb on + strand, within Dsui_3382at 3624.597 kb on + strand, within Dsui_3382at 3624.603 kb on - strand, within Dsui_3382at 3624.755 kb on + strandat 3624.762 kb on + strandat 3624.772 kb on + strandat 3624.787 kb on + strand, within Dsui_3382

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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3,622,368 - -0.8
3,622,559 + +0.8
3,622,618 - +0.4
3,622,721 - Dsui_3380 0.23 +0.4
3,622,781 + Dsui_3380 0.33 +0.0
3,622,825 - +0.1
3,622,962 - Dsui_3380 0.60 -0.0
3,622,985 - Dsui_3380 0.64 +0.5
3,622,985 - -1.5
3,622,986 - Dsui_3380 0.64 +0.6
3,623,026 - Dsui_3380 0.70 -0.2
3,623,027 - Dsui_3380 0.70 +0.6
3,623,027 - Dsui_3380 0.70 -0.0
3,623,039 - Dsui_3380 0.72 -0.1
3,623,062 + +1.8
3,623,128 - Dsui_3380 0.86 +0.1
3,623,169 - -0.6
3,623,174 - +1.8
3,623,183 - +1.2
3,623,184 - +1.3
3,623,213 + +0.2
3,623,282 - +0.5
3,623,333 - -0.7
3,623,371 - Dsui_3381 0.12 +1.3
3,623,423 - Dsui_3381 0.22 +1.1
3,623,460 - Dsui_3381 0.28 +1.7
3,623,479 + Dsui_3381 0.31 +0.8
3,623,590 - Dsui_3381 0.51 +1.0
3,623,618 - Dsui_3381 0.55 +0.3
3,623,635 - Dsui_3381 0.58 +1.0
3,623,642 + -1.3
3,623,706 + +1.1
3,623,706 + +0.5
3,623,714 - Dsui_3381 0.72 +0.3
3,623,728 + Dsui_3381 0.74 -0.1
3,623,741 - Dsui_3381 0.77 +0.8
3,623,760 - Dsui_3381 0.80 +1.4
3,623,887 + -1.2
3,623,887 + +1.0
3,623,887 + +0.1
3,623,895 - +0.3
3,624,018 + -0.6
3,624,062 + +0.6
3,624,062 + +0.1
3,624,070 - +0.7
3,624,070 - +1.0
3,624,072 - +1.4
3,624,270 + -0.1
3,624,324 - +0.9
3,624,365 - Dsui_3382 0.12 +0.6
3,624,393 - Dsui_3382 0.15 +1.2
3,624,518 + Dsui_3382 0.29 -0.8
3,624,597 + Dsui_3382 0.37 +0.4
3,624,603 - Dsui_3382 0.38 +0.6
3,624,755 + -0.1
3,624,762 + -0.3
3,624,772 + -1.4
3,624,787 + Dsui_3382 0.58 -0.6

Or see this region's nucleotide sequence