Strain Fitness in Dechlorosoma suillum PS around Dsui_3323

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3322 and Dsui_3323 are separated by 137 nucleotidesDsui_3323 and Dsui_3324 are separated by 92 nucleotidesDsui_3324 and Dsui_3325 are separated by 61 nucleotides Dsui_3322: Dsui_3322 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 3,561,786 to 3,562,823 _3322 Dsui_3323: Dsui_3323 - tRNA-guanine transglycosylase, queuosine-34-forming, at 3,562,961 to 3,564,085 _3323 Dsui_3324: Dsui_3324 - preprotein translocase, YajC subunit, at 3,564,178 to 3,564,507 _3324 Dsui_3325: Dsui_3325 - protein-export membrane protein, SecD/SecF family, at 3,564,569 to 3,566,437 _3325 Position (kb) 3562 3563 3564 3565Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3562.016 kb on + strand, within Dsui_3322at 3562.120 kb on + strand, within Dsui_3322at 3562.260 kb on + strand, within Dsui_3322at 3562.281 kb on + strand, within Dsui_3322at 3562.419 kb on - strandat 3562.546 kb on - strandat 3562.558 kb on + strand, within Dsui_3322at 3562.558 kb on + strand, within Dsui_3322at 3562.684 kb on + strandat 3562.684 kb on + strandat 3562.684 kb on + strand, within Dsui_3322at 3562.692 kb on - strandat 3562.695 kb on - strandat 3562.740 kb on + strandat 3562.740 kb on + strandat 3562.784 kb on + strandat 3562.824 kb on - strandat 3562.847 kb on + strandat 3562.847 kb on + strandat 3562.855 kb on - strandat 3562.877 kb on + strandat 3562.885 kb on - strandat 3562.888 kb on + strandat 3562.956 kb on + strandat 3562.956 kb on + strandat 3562.956 kb on + strandat 3562.956 kb on + strandat 3562.975 kb on + strandat 3563.030 kb on + strandat 3563.061 kb on + strandat 3563.061 kb on + strandat 3563.069 kb on - strandat 3563.111 kb on + strand, within Dsui_3323at 3563.206 kb on + strand, within Dsui_3323at 3563.263 kb on + strand, within Dsui_3323at 3563.282 kb on + strand, within Dsui_3323at 3563.633 kb on + strand, within Dsui_3323at 3563.788 kb on + strandat 3563.789 kb on + strand, within Dsui_3323at 3563.904 kb on - strand, within Dsui_3323at 3563.905 kb on + strand, within Dsui_3323at 3563.970 kb on + strand, within Dsui_3323at 3563.970 kb on + strand, within Dsui_3323at 3564.080 kb on + strandat 3564.080 kb on + strandat 3564.274 kb on + strand, within Dsui_3324at 3564.475 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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3,562,016 + Dsui_3322 0.22 -0.1
3,562,120 + Dsui_3322 0.32 -1.3
3,562,260 + Dsui_3322 0.46 +0.5
3,562,281 + Dsui_3322 0.48 -0.0
3,562,419 - -3.9
3,562,546 - -0.0
3,562,558 + Dsui_3322 0.74 +0.0
3,562,558 + Dsui_3322 0.74 -0.3
3,562,684 + +0.6
3,562,684 + -2.9
3,562,684 + Dsui_3322 0.87 +0.9
3,562,692 - +2.0
3,562,695 - -0.7
3,562,740 + -0.2
3,562,740 + +0.5
3,562,784 + +0.2
3,562,824 - +0.1
3,562,847 + +0.9
3,562,847 + +1.0
3,562,855 - -2.4
3,562,877 + +0.6
3,562,885 - -0.9
3,562,888 + +0.8
3,562,956 + +1.0
3,562,956 + +0.8
3,562,956 + +0.1
3,562,956 + +1.0
3,562,975 + -1.3
3,563,030 + -0.6
3,563,061 + -0.6
3,563,061 + -3.1
3,563,069 - -2.4
3,563,111 + Dsui_3323 0.13 -0.5
3,563,206 + Dsui_3323 0.22 -1.0
3,563,263 + Dsui_3323 0.27 -1.1
3,563,282 + Dsui_3323 0.29 -1.8
3,563,633 + Dsui_3323 0.60 -0.5
3,563,788 + +0.9
3,563,789 + Dsui_3323 0.74 -0.9
3,563,904 - Dsui_3323 0.84 -1.5
3,563,905 + Dsui_3323 0.84 -0.2
3,563,970 + Dsui_3323 0.90 -4.2
3,563,970 + Dsui_3323 0.90 -0.3
3,564,080 + +0.9
3,564,080 + +1.1
3,564,274 + Dsui_3324 0.29 -3.1
3,564,475 + -2.1

Or see this region's nucleotide sequence