Strain Fitness in Dechlorosoma suillum PS around Dsui_3240

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3239 and Dsui_3240 are separated by 27 nucleotidesDsui_3240 and Dsui_3241 are separated by 168 nucleotidesDsui_3241 and Dsui_3242 overlap by 17 nucleotides Dsui_3239: Dsui_3239 - acetyl-CoA acetyltransferase, at 3,482,891 to 3,484,069 _3239 Dsui_3240: Dsui_3240 - cobalamin biosynthesis protein cobD/CbiB, at 3,484,097 to 3,485,017 _3240 Dsui_3241: Dsui_3241 - NTP pyrophosphohydrolase, at 3,485,186 to 3,485,812 _3241 Dsui_3242: Dsui_3242 - hypothetical protein, at 3,485,796 to 3,486,056 _3242 Position (kb) 3484 3485 3486Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3483.104 kb on - strand, within Dsui_3239at 3483.126 kb on + strand, within Dsui_3239at 3483.159 kb on - strand, within Dsui_3239at 3483.170 kb on - strand, within Dsui_3239at 3483.242 kb on - strand, within Dsui_3239at 3483.515 kb on + strand, within Dsui_3239at 3483.539 kb on + strand, within Dsui_3239at 3483.549 kb on + strand, within Dsui_3239at 3483.559 kb on + strand, within Dsui_3239at 3483.559 kb on + strand, within Dsui_3239at 3483.623 kb on - strand, within Dsui_3239at 3483.661 kb on - strand, within Dsui_3239at 3483.680 kb on - strand, within Dsui_3239at 3483.783 kb on - strand, within Dsui_3239at 3483.865 kb on - strand, within Dsui_3239at 3483.920 kb on + strand, within Dsui_3239at 3483.935 kb on - strand, within Dsui_3239at 3484.100 kb on + strandat 3484.245 kb on + strand, within Dsui_3240at 3484.298 kb on - strand, within Dsui_3240at 3484.389 kb on - strand, within Dsui_3240at 3484.460 kb on + strand, within Dsui_3240at 3484.520 kb on - strand, within Dsui_3240at 3484.525 kb on - strand, within Dsui_3240at 3484.525 kb on - strand, within Dsui_3240at 3484.760 kb on - strand, within Dsui_3240at 3484.809 kb on + strand, within Dsui_3240at 3484.942 kb on - strandat 3484.976 kb on - strandat 3484.976 kb on - strandat 3485.118 kb on + strandat 3485.168 kb on - strandat 3485.206 kb on + strandat 3485.276 kb on - strand, within Dsui_3241at 3485.276 kb on - strand, within Dsui_3241at 3485.276 kb on - strand, within Dsui_3241at 3485.276 kb on - strand, within Dsui_3241at 3485.351 kb on + strand, within Dsui_3241at 3485.359 kb on - strand, within Dsui_3241at 3485.397 kb on - strand, within Dsui_3241at 3485.401 kb on + strand, within Dsui_3241at 3485.428 kb on + strand, within Dsui_3241at 3485.502 kb on - strand, within Dsui_3241at 3485.578 kb on + strand, within Dsui_3241at 3485.611 kb on + strandat 3485.619 kb on - strand, within Dsui_3241at 3485.619 kb on - strand, within Dsui_3241at 3485.619 kb on - strand, within Dsui_3241at 3485.643 kb on + strand, within Dsui_3241at 3485.776 kb on + strandat 3485.840 kb on + strand, within Dsui_3242at 3485.998 kb on + strand, within Dsui_3242at 3485.998 kb on + strand, within Dsui_3242at 3485.998 kb on + strand, within Dsui_3242at 3485.998 kb on + strand, within Dsui_3242at 3486.006 kb on - strand, within Dsui_3242at 3486.006 kb on - strand, within Dsui_3242at 3486.008 kb on + strand, within Dsui_3242

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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3,483,104 - Dsui_3239 0.18 -1.0
3,483,126 + Dsui_3239 0.20 -1.4
3,483,159 - Dsui_3239 0.23 -1.1
3,483,170 - Dsui_3239 0.24 -0.8
3,483,242 - Dsui_3239 0.30 -1.1
3,483,515 + Dsui_3239 0.53 -1.6
3,483,539 + Dsui_3239 0.55 -0.4
3,483,549 + Dsui_3239 0.56 +0.2
3,483,559 + Dsui_3239 0.57 -0.3
3,483,559 + Dsui_3239 0.57 -1.3
3,483,623 - Dsui_3239 0.62 -0.7
3,483,661 - Dsui_3239 0.65 -0.1
3,483,680 - Dsui_3239 0.67 +0.1
3,483,783 - Dsui_3239 0.76 -0.4
3,483,865 - Dsui_3239 0.83 -0.7
3,483,920 + Dsui_3239 0.87 -4.5
3,483,935 - Dsui_3239 0.89 -1.5
3,484,100 + -1.5
3,484,245 + Dsui_3240 0.16 -2.2
3,484,298 - Dsui_3240 0.22 -2.0
3,484,389 - Dsui_3240 0.32 -0.9
3,484,460 + Dsui_3240 0.39 -2.0
3,484,520 - Dsui_3240 0.46 -2.4
3,484,525 - Dsui_3240 0.46 -3.2
3,484,525 - Dsui_3240 0.46 -4.2
3,484,760 - Dsui_3240 0.72 -2.8
3,484,809 + Dsui_3240 0.77 -0.4
3,484,942 - -2.3
3,484,976 - +0.1
3,484,976 - -1.6
3,485,118 + -3.5
3,485,168 - +0.7
3,485,206 + -0.2
3,485,276 - Dsui_3241 0.14 +0.6
3,485,276 - Dsui_3241 0.14 +0.9
3,485,276 - Dsui_3241 0.14 +0.7
3,485,276 - Dsui_3241 0.14 +1.3
3,485,351 + Dsui_3241 0.26 -2.6
3,485,359 - Dsui_3241 0.28 +0.4
3,485,397 - Dsui_3241 0.34 +0.8
3,485,401 + Dsui_3241 0.34 -0.4
3,485,428 + Dsui_3241 0.39 -0.5
3,485,502 - Dsui_3241 0.50 +0.3
3,485,578 + Dsui_3241 0.63 +0.8
3,485,611 + -1.0
3,485,619 - Dsui_3241 0.69 +2.2
3,485,619 - Dsui_3241 0.69 +1.3
3,485,619 - Dsui_3241 0.69 +0.6
3,485,643 + Dsui_3241 0.73 -0.4
3,485,776 + -1.1
3,485,840 + Dsui_3242 0.17 -3.4
3,485,998 + Dsui_3242 0.77 -1.7
3,485,998 + Dsui_3242 0.77 -0.9
3,485,998 + Dsui_3242 0.77 -1.5
3,485,998 + Dsui_3242 0.77 -0.6
3,486,006 - Dsui_3242 0.80 +0.9
3,486,006 - Dsui_3242 0.80 +0.9
3,486,008 + Dsui_3242 0.81 -1.2

Or see this region's nucleotide sequence