Strain Fitness in Dechlorosoma suillum PS around Dsui_3220

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3218 and Dsui_3219 are separated by 113 nucleotidesDsui_3219 and Dsui_3220 are separated by 102 nucleotidesDsui_3220 and Dsui_3221 are separated by 110 nucleotidesDsui_3221 and Dsui_3222 are separated by 39 nucleotides Dsui_3218: Dsui_3218 - transcription termination factor Rho, at 3,456,586 to 3,457,848 _3218 Dsui_3219: Dsui_3219 - ribosomal protein L31, at 3,457,962 to 3,458,177 _3219 Dsui_3220: Dsui_3220 - PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase, at 3,458,280 to 3,459,923 _3220 Dsui_3221: Dsui_3221 - cytochrome c553, at 3,460,034 to 3,460,720 _3221 Dsui_3222: Dsui_3222 - oligoribonuclease (3'->5' exoribonuclease), at 3,460,760 to 3,461,305 _3222 Position (kb) 3458 3459 3460Strain fitness (log2 ratio) -2 -1 0 1at 3458.266 kb on - strandat 3458.938 kb on + strand, within Dsui_3220at 3458.991 kb on + strand, within Dsui_3220at 3459.380 kb on + strand, within Dsui_3220at 3459.504 kb on + strand, within Dsui_3220at 3459.916 kb on - strandat 3459.974 kb on + strandat 3459.985 kb on + strandat 3460.030 kb on - strandat 3460.032 kb on + strandat 3460.040 kb on - strandat 3460.040 kb on - strandat 3460.113 kb on - strand, within Dsui_3221at 3460.302 kb on + strand, within Dsui_3221at 3460.302 kb on + strand, within Dsui_3221at 3460.314 kb on + strand, within Dsui_3221at 3460.356 kb on + strandat 3460.401 kb on - strand, within Dsui_3221at 3460.444 kb on - strand, within Dsui_3221at 3460.498 kb on - strand, within Dsui_3221at 3460.660 kb on + strandat 3460.673 kb on + strandat 3460.673 kb on + strandat 3460.680 kb on + strandat 3460.688 kb on - strandat 3460.722 kb on + strandat 3460.726 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
remove
3,458,266 - +0.1
3,458,938 + Dsui_3220 0.40 -0.8
3,458,991 + Dsui_3220 0.43 -2.3
3,459,380 + Dsui_3220 0.67 -2.3
3,459,504 + Dsui_3220 0.74 -1.2
3,459,916 - +0.1
3,459,974 + -0.5
3,459,985 + +0.8
3,460,030 - +1.5
3,460,032 + -0.1
3,460,040 - +0.5
3,460,040 - +0.5
3,460,113 - Dsui_3221 0.11 -0.2
3,460,302 + Dsui_3221 0.39 +0.3
3,460,302 + Dsui_3221 0.39 -1.7
3,460,314 + Dsui_3221 0.41 -0.3
3,460,356 + -0.9
3,460,401 - Dsui_3221 0.53 +0.1
3,460,444 - Dsui_3221 0.60 +0.5
3,460,498 - Dsui_3221 0.68 -0.1
3,460,660 + -1.0
3,460,673 + -0.6
3,460,673 + -1.5
3,460,680 + -1.3
3,460,688 - +0.4
3,460,722 + -0.9
3,460,726 + -0.9

Or see this region's nucleotide sequence