Strain Fitness in Dechlorosoma suillum PS around Dsui_3181

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3179 and Dsui_3180 overlap by 1 nucleotidesDsui_3180 and Dsui_3181 are separated by 182 nucleotidesDsui_3181 and Dsui_3182 overlap by 4 nucleotides Dsui_3179: Dsui_3179 - signal transduction histidine kinase, at 3,410,128 to 3,411,192 _3179 Dsui_3180: Dsui_3180 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 3,411,192 to 3,411,902 _3180 Dsui_3181: Dsui_3181 - RND family efflux transporter, MFP subunit, at 3,412,085 to 3,413,245 _3181 Dsui_3182: Dsui_3182 - hydrophobe/amphiphile efflux-1 (HAE1) family transporter, at 3,413,242 to 3,416,382 _3182 Position (kb) 3412 3413 3414Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3411.132 kb on + strandat 3411.211 kb on - strandat 3411.268 kb on - strand, within Dsui_3180at 3411.419 kb on - strand, within Dsui_3180at 3411.490 kb on + strandat 3411.553 kb on - strand, within Dsui_3180at 3411.610 kb on + strand, within Dsui_3180at 3411.633 kb on + strand, within Dsui_3180at 3411.749 kb on + strandat 3411.773 kb on + strand, within Dsui_3180at 3411.781 kb on - strand, within Dsui_3180at 3412.035 kb on - strandat 3412.038 kb on + strandat 3412.045 kb on - strandat 3412.050 kb on - strandat 3412.163 kb on + strandat 3412.260 kb on - strandat 3412.324 kb on + strandat 3412.356 kb on - strandat 3412.406 kb on + strandat 3412.466 kb on - strandat 3412.550 kb on - strandat 3412.560 kb on - strandat 3412.570 kb on - strandat 3412.669 kb on - strandat 3412.825 kb on + strandat 3412.833 kb on - strand, within Dsui_3181at 3412.913 kb on - strandat 3412.989 kb on - strandat 3412.990 kb on - strandat 3413.211 kb on - strandat 3413.211 kb on - strandat 3413.381 kb on - strandat 3413.525 kb on + strandat 3413.551 kb on - strandat 3413.585 kb on - strandat 3413.632 kb on - strandat 3413.663 kb on - strandat 3413.675 kb on + strandat 3413.776 kb on - strand, within Dsui_3182at 3414.025 kb on - strandat 3414.025 kb on - strand, within Dsui_3182at 3414.025 kb on - strandat 3414.066 kb on + strandat 3414.194 kb on - strand, within Dsui_3182

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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3,411,132 + -1.0
3,411,211 - +0.9
3,411,268 - Dsui_3180 0.11 +0.3
3,411,419 - Dsui_3180 0.32 +0.6
3,411,490 + -0.8
3,411,553 - Dsui_3180 0.51 +1.7
3,411,610 + Dsui_3180 0.59 -1.5
3,411,633 + Dsui_3180 0.62 -1.5
3,411,749 + -3.0
3,411,773 + Dsui_3180 0.82 -2.3
3,411,781 - Dsui_3180 0.83 -0.0
3,412,035 - +0.4
3,412,038 + +2.4
3,412,045 - +0.7
3,412,050 - +1.5
3,412,163 + +0.2
3,412,260 - -2.2
3,412,324 + -0.7
3,412,356 - -1.2
3,412,406 + -2.9
3,412,466 - -0.4
3,412,550 - -1.2
3,412,560 - +0.5
3,412,570 - -2.1
3,412,669 - +0.0
3,412,825 + -2.9
3,412,833 - Dsui_3181 0.64 -4.1
3,412,913 - +0.4
3,412,989 - -2.3
3,412,990 - +1.2
3,413,211 - -2.9
3,413,211 - -2.2
3,413,381 - -2.0
3,413,525 + +0.5
3,413,551 - -0.3
3,413,585 - -2.5
3,413,632 - -1.7
3,413,663 - -2.6
3,413,675 + -1.5
3,413,776 - Dsui_3182 0.17 -0.0
3,414,025 - -3.9
3,414,025 - Dsui_3182 0.25 +0.3
3,414,025 - +1.5
3,414,066 + -2.6
3,414,194 - Dsui_3182 0.30 -2.3

Or see this region's nucleotide sequence