Strain Fitness in Dechlorosoma suillum PS around Dsui_3108

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3106 and Dsui_3107 overlap by 8 nucleotidesDsui_3107 and Dsui_3108 are separated by 38 nucleotidesDsui_3108 and Dsui_3109 are separated by 198 nucleotidesDsui_3109 and Dsui_3110 are separated by 53 nucleotides Dsui_3106: Dsui_3106 - hypothetical protein, at 3,326,338 to 3,326,718 _3106 Dsui_3107: Dsui_3107 - Zn-dependent hydrolase, glyoxylase, at 3,326,711 to 3,327,349 _3107 Dsui_3108: Dsui_3108 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,327,388 to 3,330,702 _3108 Dsui_3109: Dsui_3109 - cytochrome c, mono- and diheme variants family, at 3,330,901 to 3,331,326 _3109 Dsui_3110: Dsui_3110 - nitric oxide reductase large subunit, at 3,331,380 to 3,332,756 _3110 Position (kb) 3327 3328 3329 3330 3331Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3326.513 kb on - strand, within Dsui_3106at 3326.572 kb on + strand, within Dsui_3106at 3326.581 kb on + strandat 3326.647 kb on - strand, within Dsui_3106at 3326.903 kb on - strand, within Dsui_3107at 3326.908 kb on + strandat 3326.912 kb on - strand, within Dsui_3107at 3326.974 kb on - strand, within Dsui_3107at 3327.039 kb on - strand, within Dsui_3107at 3327.073 kb on + strandat 3327.090 kb on + strandat 3327.189 kb on + strandat 3327.199 kb on + strandat 3327.205 kb on + strandat 3327.213 kb on - strand, within Dsui_3107at 3327.213 kb on - strand, within Dsui_3107at 3327.291 kb on + strandat 3327.359 kb on - strandat 3327.518 kb on - strandat 3327.579 kb on + strandat 3327.734 kb on - strand, within Dsui_3108at 3327.763 kb on + strandat 3327.829 kb on - strand, within Dsui_3108at 3327.830 kb on - strand, within Dsui_3108at 3327.830 kb on - strand, within Dsui_3108at 3327.832 kb on + strand, within Dsui_3108at 3327.899 kb on + strandat 3327.904 kb on + strand, within Dsui_3108at 3327.904 kb on + strandat 3328.127 kb on + strandat 3328.435 kb on - strand, within Dsui_3108at 3328.526 kb on - strand, within Dsui_3108at 3328.530 kb on + strand, within Dsui_3108at 3328.538 kb on - strand, within Dsui_3108at 3328.645 kb on - strand, within Dsui_3108at 3328.892 kb on - strand, within Dsui_3108at 3329.007 kb on + strandat 3329.015 kb on - strand, within Dsui_3108at 3329.153 kb on - strand, within Dsui_3108at 3329.155 kb on + strandat 3329.274 kb on - strand, within Dsui_3108at 3329.314 kb on - strand, within Dsui_3108at 3329.513 kb on - strand, within Dsui_3108at 3329.718 kb on - strand, within Dsui_3108at 3329.823 kb on + strand, within Dsui_3108at 3329.872 kb on - strand, within Dsui_3108at 3329.893 kb on - strand, within Dsui_3108at 3329.989 kb on - strand, within Dsui_3108at 3330.055 kb on + strandat 3330.107 kb on + strandat 3330.117 kb on + strand, within Dsui_3108at 3330.384 kb on + strandat 3330.469 kb on + strandat 3330.479 kb on - strandat 3330.482 kb on - strandat 3330.482 kb on - strandat 3330.546 kb on - strandat 3330.596 kb on - strandat 3330.681 kb on - strandat 3330.681 kb on - strandat 3330.704 kb on + strandat 3330.776 kb on - strandat 3330.822 kb on - strandat 3330.822 kb on - strandat 3330.822 kb on - strandat 3330.846 kb on + strandat 3330.849 kb on + strandat 3330.856 kb on + strandat 3330.864 kb on - strandat 3330.884 kb on + strandat 3330.892 kb on - strandat 3330.972 kb on + strand, within Dsui_3109at 3330.972 kb on + strand, within Dsui_3109at 3330.980 kb on - strand, within Dsui_3109at 3330.980 kb on - strand, within Dsui_3109at 3331.043 kb on - strandat 3331.099 kb on + strand, within Dsui_3109at 3331.141 kb on + strand, within Dsui_3109at 3331.187 kb on - strandat 3331.191 kb on + strand, within Dsui_3109at 3331.199 kb on - strand, within Dsui_3109at 3331.256 kb on + strand, within Dsui_3109at 3331.287 kb on + strandat 3331.369 kb on - strandat 3331.400 kb on - strandat 3331.456 kb on - strandat 3331.461 kb on - strandat 3331.470 kb on + strandat 3331.535 kb on - strand, within Dsui_3110at 3331.537 kb on + strand, within Dsui_3110at 3331.555 kb on - strandat 3331.622 kb on + strand, within Dsui_3110at 3331.627 kb on + strand, within Dsui_3110at 3331.627 kb on + strand, within Dsui_3110

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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3,326,513 - Dsui_3106 0.46 +0.5
3,326,572 + Dsui_3106 0.61 -1.1
3,326,581 + -3.6
3,326,647 - Dsui_3106 0.81 +1.2
3,326,903 - Dsui_3107 0.30 +0.1
3,326,908 + -1.4
3,326,912 - Dsui_3107 0.31 +0.1
3,326,974 - Dsui_3107 0.41 -0.9
3,327,039 - Dsui_3107 0.51 +0.3
3,327,073 + -1.8
3,327,090 + +1.5
3,327,189 + +1.0
3,327,199 + -0.8
3,327,205 + -3.3
3,327,213 - Dsui_3107 0.79 -0.2
3,327,213 - Dsui_3107 0.79 +0.3
3,327,291 + +2.4
3,327,359 - -0.2
3,327,518 - +1.8
3,327,579 + -0.9
3,327,734 - Dsui_3108 0.10 +0.6
3,327,763 + -1.1
3,327,829 - Dsui_3108 0.13 +1.8
3,327,830 - Dsui_3108 0.13 +1.6
3,327,830 - Dsui_3108 0.13 +0.8
3,327,832 + Dsui_3108 0.13 +0.8
3,327,899 + -1.2
3,327,904 + Dsui_3108 0.16 -0.1
3,327,904 + -0.1
3,328,127 + +0.5
3,328,435 - Dsui_3108 0.32 -0.2
3,328,526 - Dsui_3108 0.34 +0.8
3,328,530 + Dsui_3108 0.34 +1.0
3,328,538 - Dsui_3108 0.35 +0.3
3,328,645 - Dsui_3108 0.38 +0.8
3,328,892 - Dsui_3108 0.45 +1.0
3,329,007 + -3.4
3,329,015 - Dsui_3108 0.49 +1.2
3,329,153 - Dsui_3108 0.53 +1.0
3,329,155 + -1.2
3,329,274 - Dsui_3108 0.57 +0.4
3,329,314 - Dsui_3108 0.58 +0.7
3,329,513 - Dsui_3108 0.64 +1.5
3,329,718 - Dsui_3108 0.70 +0.9
3,329,823 + Dsui_3108 0.73 -1.0
3,329,872 - Dsui_3108 0.75 +1.8
3,329,893 - Dsui_3108 0.76 +1.6
3,329,989 - Dsui_3108 0.78 +1.0
3,330,055 + -3.1
3,330,107 + -1.2
3,330,117 + Dsui_3108 0.82 -1.3
3,330,384 + -4.0
3,330,469 + +1.0
3,330,479 - +0.8
3,330,482 - +0.8
3,330,482 - +1.1
3,330,546 - +0.9
3,330,596 - +2.2
3,330,681 - +0.3
3,330,681 - +0.8
3,330,704 + +1.0
3,330,776 - -1.2
3,330,822 - -0.8
3,330,822 - -1.8
3,330,822 - -4.3
3,330,846 + +0.1
3,330,849 + -2.9
3,330,856 + -0.7
3,330,864 - -3.6
3,330,884 + -3.3
3,330,892 - -0.6
3,330,972 + Dsui_3109 0.17 -3.8
3,330,972 + Dsui_3109 0.17 -0.9
3,330,980 - Dsui_3109 0.19 -0.7
3,330,980 - Dsui_3109 0.19 -0.5
3,331,043 - -3.0
3,331,099 + Dsui_3109 0.46 -0.0
3,331,141 + Dsui_3109 0.56 +0.7
3,331,187 - -2.5
3,331,191 + Dsui_3109 0.68 +0.2
3,331,199 - Dsui_3109 0.70 -3.4
3,331,256 + Dsui_3109 0.83 +0.3
3,331,287 + +1.1
3,331,369 - -1.5
3,331,400 - +0.2
3,331,456 - -2.9
3,331,461 - -0.8
3,331,470 + -0.2
3,331,535 - Dsui_3110 0.11 -3.8
3,331,537 + Dsui_3110 0.11 +0.6
3,331,555 - -2.0
3,331,622 + Dsui_3110 0.18 +0.1
3,331,627 + Dsui_3110 0.18 -0.1
3,331,627 + Dsui_3110 0.18 +0.6

Or see this region's nucleotide sequence