Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3106 and Dsui_3107 overlap by 8 nucleotides Dsui_3107 and Dsui_3108 are separated by 38 nucleotides Dsui_3108 and Dsui_3109 are separated by 198 nucleotides Dsui_3109 and Dsui_3110 are separated by 53 nucleotides
Dsui_3106: Dsui_3106 - hypothetical protein, at 3,326,338 to 3,326,718
_3106
Dsui_3107: Dsui_3107 - Zn-dependent hydrolase, glyoxylase, at 3,326,711 to 3,327,349
_3107
Dsui_3108: Dsui_3108 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,327,388 to 3,330,702
_3108
Dsui_3109: Dsui_3109 - cytochrome c, mono- and diheme variants family, at 3,330,901 to 3,331,326
_3109
Dsui_3110: Dsui_3110 - nitric oxide reductase large subunit, at 3,331,380 to 3,332,756
_3110
Position (kb)
3327
3328
3329
3330
3331 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3326.513 kb on - strand, within Dsui_3106 at 3326.572 kb on + strand, within Dsui_3106 at 3326.581 kb on + strand at 3326.647 kb on - strand, within Dsui_3106 at 3326.903 kb on - strand, within Dsui_3107 at 3326.908 kb on + strand at 3326.912 kb on - strand, within Dsui_3107 at 3326.974 kb on - strand, within Dsui_3107 at 3327.039 kb on - strand, within Dsui_3107 at 3327.073 kb on + strand at 3327.090 kb on + strand at 3327.189 kb on + strand at 3327.199 kb on + strand at 3327.205 kb on + strand at 3327.213 kb on - strand, within Dsui_3107 at 3327.213 kb on - strand, within Dsui_3107 at 3327.291 kb on + strand at 3327.359 kb on - strand at 3327.518 kb on - strand at 3327.579 kb on + strand at 3327.734 kb on - strand, within Dsui_3108 at 3327.763 kb on + strand at 3327.829 kb on - strand, within Dsui_3108 at 3327.830 kb on - strand, within Dsui_3108 at 3327.830 kb on - strand, within Dsui_3108 at 3327.832 kb on + strand, within Dsui_3108 at 3327.899 kb on + strand at 3327.904 kb on + strand, within Dsui_3108 at 3327.904 kb on + strand at 3328.127 kb on + strand at 3328.435 kb on - strand, within Dsui_3108 at 3328.526 kb on - strand, within Dsui_3108 at 3328.530 kb on + strand, within Dsui_3108 at 3328.538 kb on - strand, within Dsui_3108 at 3328.645 kb on - strand, within Dsui_3108 at 3328.892 kb on - strand, within Dsui_3108 at 3329.007 kb on + strand at 3329.015 kb on - strand, within Dsui_3108 at 3329.153 kb on - strand, within Dsui_3108 at 3329.155 kb on + strand at 3329.274 kb on - strand, within Dsui_3108 at 3329.314 kb on - strand, within Dsui_3108 at 3329.513 kb on - strand, within Dsui_3108 at 3329.718 kb on - strand, within Dsui_3108 at 3329.823 kb on + strand, within Dsui_3108 at 3329.872 kb on - strand, within Dsui_3108 at 3329.893 kb on - strand, within Dsui_3108 at 3329.989 kb on - strand, within Dsui_3108 at 3330.055 kb on + strand at 3330.107 kb on + strand at 3330.117 kb on + strand, within Dsui_3108 at 3330.384 kb on + strand at 3330.469 kb on + strand at 3330.479 kb on - strand at 3330.482 kb on - strand at 3330.482 kb on - strand at 3330.546 kb on - strand at 3330.596 kb on - strand at 3330.681 kb on - strand at 3330.681 kb on - strand at 3330.704 kb on + strand at 3330.776 kb on - strand at 3330.822 kb on - strand at 3330.822 kb on - strand at 3330.822 kb on - strand at 3330.846 kb on + strand at 3330.849 kb on + strand at 3330.856 kb on + strand at 3330.864 kb on - strand at 3330.884 kb on + strand at 3330.892 kb on - strand at 3330.972 kb on + strand, within Dsui_3109 at 3330.972 kb on + strand, within Dsui_3109 at 3330.980 kb on - strand, within Dsui_3109 at 3330.980 kb on - strand, within Dsui_3109 at 3331.043 kb on - strand at 3331.099 kb on + strand, within Dsui_3109 at 3331.141 kb on + strand, within Dsui_3109 at 3331.187 kb on - strand at 3331.191 kb on + strand, within Dsui_3109 at 3331.199 kb on - strand, within Dsui_3109 at 3331.256 kb on + strand, within Dsui_3109 at 3331.287 kb on + strand at 3331.369 kb on - strand at 3331.400 kb on - strand at 3331.456 kb on - strand at 3331.461 kb on - strand at 3331.470 kb on + strand at 3331.535 kb on - strand, within Dsui_3110 at 3331.537 kb on + strand, within Dsui_3110 at 3331.555 kb on - strand at 3331.622 kb on + strand, within Dsui_3110 at 3331.627 kb on + strand, within Dsui_3110 at 3331.627 kb on + strand, within Dsui_3110
Per-strain Table
Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate remove 3,326,513 - Dsui_3106 0.46 +0.5 3,326,572 + Dsui_3106 0.61 -1.1 3,326,581 + -3.6 3,326,647 - Dsui_3106 0.81 +1.2 3,326,903 - Dsui_3107 0.30 +0.1 3,326,908 + -1.4 3,326,912 - Dsui_3107 0.31 +0.1 3,326,974 - Dsui_3107 0.41 -0.9 3,327,039 - Dsui_3107 0.51 +0.3 3,327,073 + -1.8 3,327,090 + +1.5 3,327,189 + +1.0 3,327,199 + -0.8 3,327,205 + -3.3 3,327,213 - Dsui_3107 0.79 -0.2 3,327,213 - Dsui_3107 0.79 +0.3 3,327,291 + +2.4 3,327,359 - -0.2 3,327,518 - +1.8 3,327,579 + -0.9 3,327,734 - Dsui_3108 0.10 +0.6 3,327,763 + -1.1 3,327,829 - Dsui_3108 0.13 +1.8 3,327,830 - Dsui_3108 0.13 +1.6 3,327,830 - Dsui_3108 0.13 +0.8 3,327,832 + Dsui_3108 0.13 +0.8 3,327,899 + -1.2 3,327,904 + Dsui_3108 0.16 -0.1 3,327,904 + -0.1 3,328,127 + +0.5 3,328,435 - Dsui_3108 0.32 -0.2 3,328,526 - Dsui_3108 0.34 +0.8 3,328,530 + Dsui_3108 0.34 +1.0 3,328,538 - Dsui_3108 0.35 +0.3 3,328,645 - Dsui_3108 0.38 +0.8 3,328,892 - Dsui_3108 0.45 +1.0 3,329,007 + -3.4 3,329,015 - Dsui_3108 0.49 +1.2 3,329,153 - Dsui_3108 0.53 +1.0 3,329,155 + -1.2 3,329,274 - Dsui_3108 0.57 +0.4 3,329,314 - Dsui_3108 0.58 +0.7 3,329,513 - Dsui_3108 0.64 +1.5 3,329,718 - Dsui_3108 0.70 +0.9 3,329,823 + Dsui_3108 0.73 -1.0 3,329,872 - Dsui_3108 0.75 +1.8 3,329,893 - Dsui_3108 0.76 +1.6 3,329,989 - Dsui_3108 0.78 +1.0 3,330,055 + -3.1 3,330,107 + -1.2 3,330,117 + Dsui_3108 0.82 -1.3 3,330,384 + -4.0 3,330,469 + +1.0 3,330,479 - +0.8 3,330,482 - +0.8 3,330,482 - +1.1 3,330,546 - +0.9 3,330,596 - +2.2 3,330,681 - +0.3 3,330,681 - +0.8 3,330,704 + +1.0 3,330,776 - -1.2 3,330,822 - -0.8 3,330,822 - -1.8 3,330,822 - -4.3 3,330,846 + +0.1 3,330,849 + -2.9 3,330,856 + -0.7 3,330,864 - -3.6 3,330,884 + -3.3 3,330,892 - -0.6 3,330,972 + Dsui_3109 0.17 -3.8 3,330,972 + Dsui_3109 0.17 -0.9 3,330,980 - Dsui_3109 0.19 -0.7 3,330,980 - Dsui_3109 0.19 -0.5 3,331,043 - -3.0 3,331,099 + Dsui_3109 0.46 -0.0 3,331,141 + Dsui_3109 0.56 +0.7 3,331,187 - -2.5 3,331,191 + Dsui_3109 0.68 +0.2 3,331,199 - Dsui_3109 0.70 -3.4 3,331,256 + Dsui_3109 0.83 +0.3 3,331,287 + +1.1 3,331,369 - -1.5 3,331,400 - +0.2 3,331,456 - -2.9 3,331,461 - -0.8 3,331,470 + -0.2 3,331,535 - Dsui_3110 0.11 -3.8 3,331,537 + Dsui_3110 0.11 +0.6 3,331,555 - -2.0 3,331,622 + Dsui_3110 0.18 +0.1 3,331,627 + Dsui_3110 0.18 -0.1 3,331,627 + Dsui_3110 0.18 +0.6
Or see this region's nucleotide sequence