Strain Fitness in Dechlorosoma suillum PS around Dsui_2896

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2894 and Dsui_2895 overlap by 4 nucleotidesDsui_2895 and Dsui_2896 are separated by 6 nucleotidesDsui_2896 and Dsui_2897 are separated by 15 nucleotidesDsui_2897 and Dsui_2898 are separated by 9 nucleotides Dsui_2894: Dsui_2894 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,094,276 to 3,096,444 _2894 Dsui_2895: Dsui_2895 - ABC-type uncharacterized transport system, periplasmic component, at 3,096,441 to 3,097,430 _2895 Dsui_2896: Dsui_2896 - outer membrane cobalamin receptor protein, at 3,097,437 to 3,099,677 _2896 Dsui_2897: Dsui_2897 - deacetylase, histone deacetylase/acetoin utilization protein, at 3,099,693 to 3,100,595 _2897 Dsui_2898: Dsui_2898 - yjeF-like protein, hydroxyethylthiazole kinase-related protein, at 3,100,605 to 3,102,113 _2898 Position (kb) 3097 3098 3099 3100Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3096.455 kb on - strandat 3096.460 kb on - strandat 3096.477 kb on - strandat 3096.566 kb on + strandat 3096.574 kb on - strand, within Dsui_2895at 3096.651 kb on + strandat 3096.712 kb on - strand, within Dsui_2895at 3096.862 kb on - strand, within Dsui_2895at 3096.878 kb on - strand, within Dsui_2895at 3096.964 kb on + strand, within Dsui_2895at 3097.161 kb on + strand, within Dsui_2895at 3097.339 kb on - strandat 3097.414 kb on + strandat 3097.529 kb on - strandat 3097.558 kb on - strandat 3097.596 kb on + strandat 3097.631 kb on - strandat 3097.631 kb on - strandat 3097.651 kb on + strandat 3097.669 kb on + strandat 3097.703 kb on + strand, within Dsui_2896at 3097.718 kb on - strand, within Dsui_2896at 3097.747 kb on - strand, within Dsui_2896at 3097.790 kb on + strand, within Dsui_2896at 3097.790 kb on + strand, within Dsui_2896at 3097.793 kb on - strand, within Dsui_2896at 3097.799 kb on + strandat 3097.853 kb on - strand, within Dsui_2896at 3097.967 kb on + strandat 3097.975 kb on - strand, within Dsui_2896at 3098.012 kb on + strandat 3098.099 kb on - strand, within Dsui_2896at 3098.101 kb on - strand, within Dsui_2896at 3098.110 kb on + strand, within Dsui_2896at 3098.115 kb on - strand, within Dsui_2896at 3098.118 kb on - strand, within Dsui_2896at 3098.150 kb on + strandat 3098.150 kb on + strand, within Dsui_2896at 3098.158 kb on - strand, within Dsui_2896at 3098.158 kb on - strand, within Dsui_2896at 3098.191 kb on - strand, within Dsui_2896at 3098.348 kb on + strand, within Dsui_2896at 3098.356 kb on - strand, within Dsui_2896at 3098.356 kb on - strand, within Dsui_2896at 3098.401 kb on + strand, within Dsui_2896at 3098.403 kb on - strand, within Dsui_2896at 3098.403 kb on - strand, within Dsui_2896at 3098.487 kb on + strandat 3098.487 kb on + strandat 3098.495 kb on - strand, within Dsui_2896at 3098.495 kb on - strand, within Dsui_2896at 3098.495 kb on - strand, within Dsui_2896at 3098.553 kb on - strand, within Dsui_2896at 3098.555 kb on + strand, within Dsui_2896at 3098.570 kb on + strandat 3098.572 kb on - strand, within Dsui_2896at 3098.572 kb on - strand, within Dsui_2896at 3098.579 kb on - strand, within Dsui_2896at 3098.589 kb on + strand, within Dsui_2896at 3098.673 kb on + strandat 3098.681 kb on - strand, within Dsui_2896at 3098.681 kb on - strand, within Dsui_2896at 3098.888 kb on - strand, within Dsui_2896at 3098.888 kb on - strand, within Dsui_2896at 3098.888 kb on - strand, within Dsui_2896at 3098.973 kb on - strand, within Dsui_2896at 3098.990 kb on - strand, within Dsui_2896at 3099.010 kb on - strand, within Dsui_2896at 3099.176 kb on - strand, within Dsui_2896at 3099.220 kb on - strand, within Dsui_2896at 3099.383 kb on + strand, within Dsui_2896at 3099.455 kb on + strandat 3099.701 kb on + strandat 3099.701 kb on - strandat 3099.725 kb on + strandat 3099.845 kb on + strandat 3099.948 kb on + strand, within Dsui_2897at 3100.008 kb on - strandat 3100.010 kb on + strand, within Dsui_2897at 3100.243 kb on - strandat 3100.376 kb on + strand, within Dsui_2897at 3100.443 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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3,096,455 - +0.0
3,096,460 - +0.6
3,096,477 - -0.6
3,096,566 + -2.1
3,096,574 - Dsui_2895 0.13 +0.5
3,096,651 + -0.8
3,096,712 - Dsui_2895 0.27 +0.4
3,096,862 - Dsui_2895 0.43 +0.3
3,096,878 - Dsui_2895 0.44 +0.7
3,096,964 + Dsui_2895 0.53 -1.8
3,097,161 + Dsui_2895 0.73 -0.6
3,097,339 - +2.1
3,097,414 + -2.4
3,097,529 - -0.1
3,097,558 - +0.6
3,097,596 + -1.0
3,097,631 - +0.4
3,097,631 - +1.8
3,097,651 + -4.1
3,097,669 + -0.9
3,097,703 + Dsui_2896 0.12 -1.3
3,097,718 - Dsui_2896 0.13 +0.7
3,097,747 - Dsui_2896 0.14 +2.3
3,097,790 + Dsui_2896 0.16 -2.4
3,097,790 + Dsui_2896 0.16 -0.4
3,097,793 - Dsui_2896 0.16 +0.7
3,097,799 + +1.7
3,097,853 - Dsui_2896 0.19 +1.1
3,097,967 + -1.6
3,097,975 - Dsui_2896 0.24 +1.5
3,098,012 + +2.5
3,098,099 - Dsui_2896 0.30 +1.2
3,098,101 - Dsui_2896 0.30 +0.7
3,098,110 + Dsui_2896 0.30 -3.7
3,098,115 - Dsui_2896 0.30 +0.8
3,098,118 - Dsui_2896 0.30 -0.3
3,098,150 + +1.2
3,098,150 + Dsui_2896 0.32 -1.4
3,098,158 - Dsui_2896 0.32 +0.5
3,098,158 - Dsui_2896 0.32 +1.0
3,098,191 - Dsui_2896 0.34 +0.5
3,098,348 + Dsui_2896 0.41 +0.8
3,098,356 - Dsui_2896 0.41 +0.9
3,098,356 - Dsui_2896 0.41 +1.2
3,098,401 + Dsui_2896 0.43 -2.3
3,098,403 - Dsui_2896 0.43 +1.3
3,098,403 - Dsui_2896 0.43 +1.2
3,098,487 + -2.1
3,098,487 + -1.6
3,098,495 - Dsui_2896 0.47 +1.4
3,098,495 - Dsui_2896 0.47 +0.6
3,098,495 - Dsui_2896 0.47 +0.4
3,098,553 - Dsui_2896 0.50 +0.4
3,098,555 + Dsui_2896 0.50 -2.8
3,098,570 + -2.9
3,098,572 - Dsui_2896 0.51 +0.5
3,098,572 - Dsui_2896 0.51 +0.0
3,098,579 - Dsui_2896 0.51 +1.0
3,098,589 + Dsui_2896 0.51 -0.7
3,098,673 + +0.7
3,098,681 - Dsui_2896 0.56 +1.3
3,098,681 - Dsui_2896 0.56 +0.7
3,098,888 - Dsui_2896 0.65 +1.0
3,098,888 - Dsui_2896 0.65 +0.7
3,098,888 - Dsui_2896 0.65 +0.7
3,098,973 - Dsui_2896 0.69 +0.2
3,098,990 - Dsui_2896 0.69 +1.3
3,099,010 - Dsui_2896 0.70 +1.5
3,099,176 - Dsui_2896 0.78 +0.8
3,099,220 - Dsui_2896 0.80 +0.8
3,099,383 + Dsui_2896 0.87 +0.6
3,099,455 + +0.9
3,099,701 + +0.4
3,099,701 - -1.5
3,099,725 + -0.3
3,099,845 + +0.3
3,099,948 + Dsui_2897 0.28 +1.0
3,100,008 - -1.6
3,100,010 + Dsui_2897 0.35 +0.8
3,100,243 - -3.1
3,100,376 + Dsui_2897 0.76 +1.6
3,100,443 - -1.9

Or see this region's nucleotide sequence