Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2823 and Dsui_2824 are separated by 100 nucleotides Dsui_2824 and Dsui_2825 are separated by 143 nucleotides Dsui_2825 and Dsui_2826 are separated by 33 nucleotides Dsui_2826 and Dsui_2827 are separated by 204 nucleotides Dsui_2827 and Dsui_2828 are separated by 59 nucleotides
Dsui_2823: Dsui_2823 - DNA internalization-related competence protein ComEC/Rec2, at 2,999,025 to 3,000,758
_2823
Dsui_2824: Dsui_2824 - hypothetical protein, at 3,000,859 to 3,000,951
_2824
Dsui_2825: Dsui_2825 - hypothetical protein, at 3,001,095 to 3,004,202
_2825
Dsui_2826: Dsui_2826 - hypothetical protein, at 3,004,236 to 3,004,346
_2826
Dsui_2827: Dsui_2827 - hypothetical protein, at 3,004,551 to 3,005,000
_2827
Dsui_2828: Dsui_2828 - hypothetical protein, at 3,005,060 to 3,006,079
_2828
Position (kb)
3001
3002
3003
3004
3005 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3000.198 kb on - strand, within Dsui_2823 at 3000.247 kb on + strand at 3000.266 kb on + strand at 3000.300 kb on - strand, within Dsui_2823 at 3000.399 kb on - strand, within Dsui_2823 at 3000.470 kb on + strand, within Dsui_2823 at 3000.478 kb on - strand at 3000.488 kb on - strand, within Dsui_2823 at 3000.573 kb on - strand, within Dsui_2823 at 3000.575 kb on - strand, within Dsui_2823 at 3000.618 kb on + strand at 3000.618 kb on + strand at 3000.626 kb on - strand at 3000.732 kb on - strand at 3000.781 kb on + strand at 3000.781 kb on - strand at 3000.788 kb on - strand at 3000.789 kb on - strand at 3000.805 kb on + strand at 3000.812 kb on + strand at 3000.813 kb on - strand at 3000.820 kb on - strand at 3000.820 kb on - strand at 3000.820 kb on - strand at 3000.822 kb on + strand at 3000.823 kb on - strand at 3000.823 kb on - strand at 3000.823 kb on - strand at 3000.823 kb on - strand at 3000.830 kb on - strand at 3000.830 kb on - strand at 3000.846 kb on + strand at 3000.931 kb on - strand, within Dsui_2824 at 3000.931 kb on - strand, within Dsui_2824 at 3000.948 kb on - strand at 3001.012 kb on + strand at 3001.049 kb on + strand at 3001.049 kb on + strand at 3001.057 kb on - strand at 3001.066 kb on - strand at 3001.066 kb on - strand at 3001.066 kb on - strand at 3001.096 kb on - strand at 3001.124 kb on - strand at 3001.125 kb on + strand at 3001.133 kb on - strand at 3001.135 kb on - strand at 3001.186 kb on - strand at 3001.186 kb on - strand at 3001.186 kb on - strand at 3001.303 kb on + strand at 3001.303 kb on + strand at 3001.305 kb on + strand at 3001.305 kb on + strand at 3001.308 kb on - strand at 3001.308 kb on - strand at 3001.311 kb on - strand at 3001.367 kb on + strand at 3001.375 kb on - strand at 3001.375 kb on - strand at 3001.401 kb on + strand at 3001.401 kb on + strand at 3001.409 kb on - strand, within Dsui_2825 at 3001.409 kb on - strand, within Dsui_2825 at 3001.522 kb on - strand, within Dsui_2825 at 3001.529 kb on - strand, within Dsui_2825 at 3001.590 kb on + strand, within Dsui_2825 at 3001.639 kb on + strand at 3001.654 kb on + strand, within Dsui_2825 at 3001.662 kb on - strand at 3001.688 kb on + strand, within Dsui_2825 at 3001.733 kb on + strand at 3001.780 kb on + strand, within Dsui_2825 at 3001.782 kb on - strand at 3001.807 kb on - strand, within Dsui_2825 at 3001.842 kb on + strand, within Dsui_2825 at 3001.844 kb on + strand, within Dsui_2825 at 3001.850 kb on - strand, within Dsui_2825 at 3001.852 kb on - strand at 3001.894 kb on - strand, within Dsui_2825 at 3001.939 kb on + strand, within Dsui_2825 at 3001.977 kb on - strand, within Dsui_2825 at 3001.986 kb on + strand, within Dsui_2825 at 3002.031 kb on - strand, within Dsui_2825 at 3002.071 kb on + strand, within Dsui_2825 at 3002.074 kb on + strand, within Dsui_2825 at 3002.102 kb on + strand, within Dsui_2825 at 3002.104 kb on + strand, within Dsui_2825 at 3002.104 kb on + strand, within Dsui_2825 at 3002.104 kb on + strand, within Dsui_2825 at 3002.104 kb on + strand at 3002.111 kb on - strand, within Dsui_2825 at 3002.112 kb on - strand at 3002.118 kb on - strand at 3002.118 kb on - strand at 3002.118 kb on - strand at 3002.118 kb on - strand at 3002.150 kb on - strand, within Dsui_2825 at 3002.205 kb on + strand, within Dsui_2825 at 3002.257 kb on + strand, within Dsui_2825 at 3002.257 kb on + strand, within Dsui_2825 at 3002.299 kb on - strand, within Dsui_2825 at 3002.364 kb on + strand, within Dsui_2825 at 3002.375 kb on + strand, within Dsui_2825 at 3002.385 kb on + strand, within Dsui_2825 at 3002.391 kb on - strand at 3002.551 kb on - strand, within Dsui_2825 at 3002.563 kb on - strand, within Dsui_2825 at 3002.567 kb on + strand, within Dsui_2825 at 3002.623 kb on - strand, within Dsui_2825 at 3002.723 kb on - strand, within Dsui_2825 at 3002.784 kb on + strand, within Dsui_2825 at 3002.878 kb on + strand, within Dsui_2825 at 3002.878 kb on + strand, within Dsui_2825 at 3002.881 kb on - strand, within Dsui_2825 at 3002.905 kb on - strand, within Dsui_2825 at 3002.961 kb on + strand, within Dsui_2825 at 3002.966 kb on - strand at 3003.084 kb on - strand, within Dsui_2825 at 3003.086 kb on - strand at 3003.112 kb on + strand, within Dsui_2825 at 3003.112 kb on + strand, within Dsui_2825 at 3003.120 kb on - strand, within Dsui_2825 at 3003.261 kb on + strand, within Dsui_2825 at 3003.309 kb on - strand, within Dsui_2825 at 3003.335 kb on + strand, within Dsui_2825 at 3003.372 kb on + strand, within Dsui_2825 at 3003.399 kb on - strand, within Dsui_2825 at 3003.491 kb on + strand, within Dsui_2825 at 3003.529 kb on + strand, within Dsui_2825 at 3003.532 kb on - strand, within Dsui_2825 at 3003.575 kb on + strand, within Dsui_2825 at 3003.580 kb on + strand, within Dsui_2825 at 3003.580 kb on + strand, within Dsui_2825 at 3003.580 kb on + strand, within Dsui_2825 at 3003.580 kb on + strand, within Dsui_2825 at 3003.588 kb on - strand, within Dsui_2825 at 3003.636 kb on - strand at 3003.647 kb on - strand at 3003.773 kb on - strand, within Dsui_2825 at 3003.782 kb on - strand, within Dsui_2825 at 3003.802 kb on - strand, within Dsui_2825 at 3003.860 kb on + strand, within Dsui_2825 at 3003.868 kb on - strand, within Dsui_2825 at 3003.976 kb on - strand at 3004.021 kb on - strand at 3004.037 kb on + strand at 3004.040 kb on - strand at 3004.052 kb on + strand at 3004.102 kb on - strand at 3004.131 kb on + strand at 3004.200 kb on - strand at 3004.284 kb on - strand, within Dsui_2826 at 3004.346 kb on + strand at 3004.354 kb on - strand at 3004.427 kb on + strand at 3004.427 kb on + strand at 3004.435 kb on - strand at 3004.504 kb on - strand at 3004.577 kb on - strand at 3004.591 kb on + strand at 3004.610 kb on + strand, within Dsui_2827 at 3004.645 kb on + strand, within Dsui_2827 at 3004.645 kb on + strand, within Dsui_2827 at 3004.669 kb on - strand, within Dsui_2827 at 3004.693 kb on + strand, within Dsui_2827 at 3004.721 kb on - strand, within Dsui_2827 at 3004.740 kb on - strand, within Dsui_2827 at 3004.897 kb on + strand, within Dsui_2827 at 3004.903 kb on + strand, within Dsui_2827 at 3004.905 kb on + strand, within Dsui_2827 at 3004.915 kb on - strand, within Dsui_2827 at 3004.971 kb on + strand at 3005.051 kb on + strand at 3005.111 kb on + strand at 3005.129 kb on - strand at 3005.196 kb on - strand, within Dsui_2828
Per-strain Table
Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate remove 3,000,198 - Dsui_2823 0.68 +0.3 3,000,247 + -3.7 3,000,266 + -4.4 3,000,300 - Dsui_2823 0.74 -0.1 3,000,399 - Dsui_2823 0.79 +0.1 3,000,470 + Dsui_2823 0.83 -1.2 3,000,478 - -0.7 3,000,488 - Dsui_2823 0.84 +0.4 3,000,573 - Dsui_2823 0.89 -0.2 3,000,575 - Dsui_2823 0.89 +0.1 3,000,618 + -0.3 3,000,618 + -3.4 3,000,626 - -0.6 3,000,732 - +0.4 3,000,781 + -1.8 3,000,781 - -0.2 3,000,788 - +0.5 3,000,789 - -1.5 3,000,805 + -2.7 3,000,812 + -2.5 3,000,813 - -1.3 3,000,820 - +0.1 3,000,820 - -0.2 3,000,820 - +1.3 3,000,822 + -1.2 3,000,823 - +0.4 3,000,823 - +0.2 3,000,823 - +0.7 3,000,823 - +0.3 3,000,830 - +1.6 3,000,830 - +0.8 3,000,846 + -1.8 3,000,931 - Dsui_2824 0.77 +0.9 3,000,931 - Dsui_2824 0.77 +0.0 3,000,948 - +1.2 3,001,012 + -3.5 3,001,049 + -0.5 3,001,049 + -0.8 3,001,057 - +0.2 3,001,066 - +0.2 3,001,066 - -0.2 3,001,066 - +0.8 3,001,096 - +0.7 3,001,124 - +0.1 3,001,125 + +0.2 3,001,133 - -0.6 3,001,135 - -0.1 3,001,186 - +1.5 3,001,186 - +0.7 3,001,186 - +0.7 3,001,303 + -1.9 3,001,303 + -4.2 3,001,305 + -2.7 3,001,305 + +0.5 3,001,308 - +0.6 3,001,308 - -2.8 3,001,311 - +0.4 3,001,367 + -0.2 3,001,375 - +0.3 3,001,375 - +0.3 3,001,401 + -2.7 3,001,401 + -2.0 3,001,409 - Dsui_2825 0.10 +0.7 3,001,409 - Dsui_2825 0.10 +0.3 3,001,522 - Dsui_2825 0.14 -0.7 3,001,529 - Dsui_2825 0.14 -0.6 3,001,590 + Dsui_2825 0.16 -3.3 3,001,639 + -3.3 3,001,654 + Dsui_2825 0.18 -0.4 3,001,662 - -2.5 3,001,688 + Dsui_2825 0.19 +0.5 3,001,733 + -2.7 3,001,780 + Dsui_2825 0.22 -0.1 3,001,782 - -2.7 3,001,807 - Dsui_2825 0.23 -0.5 3,001,842 + Dsui_2825 0.24 -3.7 3,001,844 + Dsui_2825 0.24 -0.7 3,001,850 - Dsui_2825 0.24 +0.1 3,001,852 - -2.3 3,001,894 - Dsui_2825 0.26 -0.9 3,001,939 + Dsui_2825 0.27 +0.1 3,001,977 - Dsui_2825 0.28 -0.7 3,001,986 + Dsui_2825 0.29 +0.4 3,002,031 - Dsui_2825 0.30 +0.9 3,002,071 + Dsui_2825 0.31 -1.3 3,002,074 + Dsui_2825 0.31 -0.9 3,002,102 + Dsui_2825 0.32 +1.1 3,002,104 + Dsui_2825 0.32 -0.9 3,002,104 + Dsui_2825 0.32 -2.9 3,002,104 + Dsui_2825 0.32 +0.1 3,002,104 + -2.7 3,002,111 - Dsui_2825 0.33 -1.8 3,002,112 - -0.1 3,002,118 - -0.5 3,002,118 - -1.8 3,002,118 - +0.6 3,002,118 - -1.5 3,002,150 - Dsui_2825 0.34 -2.1 3,002,205 + Dsui_2825 0.36 +0.0 3,002,257 + Dsui_2825 0.37 -1.6 3,002,257 + Dsui_2825 0.37 -0.4 3,002,299 - Dsui_2825 0.39 +0.4 3,002,364 + Dsui_2825 0.41 -3.5 3,002,375 + Dsui_2825 0.41 -2.5 3,002,385 + Dsui_2825 0.42 -0.8 3,002,391 - -3.0 3,002,551 - Dsui_2825 0.47 -2.4 3,002,563 - Dsui_2825 0.47 -2.9 3,002,567 + Dsui_2825 0.47 -0.3 3,002,623 - Dsui_2825 0.49 -2.0 3,002,723 - Dsui_2825 0.52 -3.1 3,002,784 + Dsui_2825 0.54 -1.8 3,002,878 + Dsui_2825 0.57 +0.7 3,002,878 + Dsui_2825 0.57 -0.1 3,002,881 - Dsui_2825 0.57 -1.0 3,002,905 - Dsui_2825 0.58 -0.4 3,002,961 + Dsui_2825 0.60 -0.6 3,002,966 - -1.5 3,003,084 - Dsui_2825 0.64 -1.9 3,003,086 - -1.2 3,003,112 + Dsui_2825 0.65 -0.6 3,003,112 + Dsui_2825 0.65 +0.0 3,003,120 - Dsui_2825 0.65 -1.0 3,003,261 + Dsui_2825 0.70 -0.0 3,003,309 - Dsui_2825 0.71 -0.8 3,003,335 + Dsui_2825 0.72 +0.0 3,003,372 + Dsui_2825 0.73 +0.8 3,003,399 - Dsui_2825 0.74 -0.8 3,003,491 + Dsui_2825 0.77 -0.2 3,003,529 + Dsui_2825 0.78 +0.4 3,003,532 - Dsui_2825 0.78 -2.5 3,003,575 + Dsui_2825 0.80 -1.2 3,003,580 + Dsui_2825 0.80 -0.4 3,003,580 + Dsui_2825 0.80 -0.3 3,003,580 + Dsui_2825 0.80 -0.2 3,003,580 + Dsui_2825 0.80 +0.3 3,003,588 - Dsui_2825 0.80 -2.7 3,003,636 - -2.4 3,003,647 - -2.8 3,003,773 - Dsui_2825 0.86 +0.5 3,003,782 - Dsui_2825 0.86 -1.2 3,003,802 - Dsui_2825 0.87 -0.6 3,003,860 + Dsui_2825 0.89 -0.9 3,003,868 - Dsui_2825 0.89 -0.8 3,003,976 - -1.1 3,004,021 - -0.1 3,004,037 + -1.8 3,004,040 - +0.9 3,004,052 + +1.3 3,004,102 - +0.5 3,004,131 + -0.1 3,004,200 - -0.4 3,004,284 - Dsui_2826 0.43 +0.5 3,004,346 + +0.4 3,004,354 - -0.3 3,004,427 + -1.0 3,004,427 + +0.4 3,004,435 - +0.3 3,004,504 - +0.2 3,004,577 - +0.3 3,004,591 + +0.8 3,004,610 + Dsui_2827 0.13 +0.3 3,004,645 + Dsui_2827 0.21 -1.0 3,004,645 + Dsui_2827 0.21 +0.4 3,004,669 - Dsui_2827 0.26 -2.1 3,004,693 + Dsui_2827 0.32 -1.5 3,004,721 - Dsui_2827 0.38 -1.4 3,004,740 - Dsui_2827 0.42 -1.0 3,004,897 + Dsui_2827 0.77 -1.2 3,004,903 + Dsui_2827 0.78 -0.6 3,004,905 + Dsui_2827 0.79 -1.7 3,004,915 - Dsui_2827 0.81 -2.2 3,004,971 + -0.2 3,005,051 + -0.6 3,005,111 + +0.6 3,005,129 - -0.5 3,005,196 - Dsui_2828 0.13 -0.3
Or see this region's nucleotide sequence