Strain Fitness in Dechlorosoma suillum PS around Dsui_2797

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2796 and Dsui_2797 are separated by 184 nucleotidesDsui_2797 and Dsui_2798 are separated by 291 nucleotides Dsui_2796: Dsui_2796 - NAD-dependent protein deacetylase, SIR2 family, at 2,964,106 to 2,964,867 _2796 Dsui_2797: Dsui_2797 - LysM repeat-containing protein, at 2,965,052 to 2,966,869 _2797 Dsui_2798: Dsui_2798 - arabinose efflux permease family protein, at 2,967,161 to 2,968,381 _2798 Position (kb) 2965 2966 2967Strain fitness (log2 ratio) -3 -2 -1 0 1at 2964.153 kb on + strandat 2964.268 kb on + strand, within Dsui_2796at 2964.280 kb on + strand, within Dsui_2796at 2964.295 kb on - strandat 2964.305 kb on - strand, within Dsui_2796at 2964.407 kb on + strand, within Dsui_2796at 2964.435 kb on + strand, within Dsui_2796at 2964.450 kb on - strandat 2964.464 kb on + strand, within Dsui_2796at 2964.521 kb on + strand, within Dsui_2796at 2964.600 kb on - strand, within Dsui_2796at 2964.651 kb on + strand, within Dsui_2796at 2964.732 kb on + strand, within Dsui_2796at 2964.750 kb on + strand, within Dsui_2796at 2964.758 kb on - strandat 2964.910 kb on - strandat 2964.937 kb on + strandat 2964.976 kb on - strandat 2965.072 kb on + strandat 2965.080 kb on - strandat 2965.180 kb on - strandat 2965.214 kb on - strandat 2965.256 kb on + strand, within Dsui_2797at 2965.447 kb on + strand, within Dsui_2797at 2965.454 kb on + strand, within Dsui_2797at 2965.558 kb on + strand, within Dsui_2797at 2965.584 kb on + strand, within Dsui_2797at 2965.584 kb on + strand, within Dsui_2797at 2965.592 kb on - strand, within Dsui_2797at 2965.649 kb on + strand, within Dsui_2797at 2965.748 kb on + strand, within Dsui_2797at 2965.868 kb on + strand, within Dsui_2797at 2965.942 kb on + strand, within Dsui_2797at 2965.981 kb on + strand, within Dsui_2797at 2965.981 kb on + strand, within Dsui_2797at 2966.059 kb on + strand, within Dsui_2797at 2966.067 kb on - strand, within Dsui_2797at 2966.098 kb on + strand, within Dsui_2797at 2966.224 kb on + strand, within Dsui_2797at 2966.254 kb on + strand, within Dsui_2797at 2966.261 kb on - strand, within Dsui_2797at 2966.261 kb on - strand, within Dsui_2797at 2966.262 kb on - strand, within Dsui_2797at 2966.546 kb on - strandat 2966.657 kb on - strand, within Dsui_2797at 2966.657 kb on - strand, within Dsui_2797at 2966.694 kb on - strandat 2966.715 kb on - strandat 2966.715 kb on - strandat 2966.738 kb on + strandat 2966.746 kb on - strandat 2966.813 kb on - strandat 2966.981 kb on - strandat 2967.011 kb on + strandat 2967.011 kb on + strandat 2967.019 kb on - strandat 2967.019 kb on - strandat 2967.063 kb on + strandat 2967.180 kb on - strandat 2967.245 kb on + strandat 2967.280 kb on + strandat 2967.288 kb on - strand, within Dsui_2798at 2967.312 kb on - strand, within Dsui_2798at 2967.315 kb on + strand, within Dsui_2798at 2967.789 kb on + strand, within Dsui_2798at 2967.789 kb on + strand, within Dsui_2798

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
remove
2,964,153 + +0.9
2,964,268 + Dsui_2796 0.21 +0.9
2,964,280 + Dsui_2796 0.23 +0.7
2,964,295 - -1.4
2,964,305 - Dsui_2796 0.26 -3.5
2,964,407 + Dsui_2796 0.40 +1.2
2,964,435 + Dsui_2796 0.43 -0.0
2,964,450 - -2.9
2,964,464 + Dsui_2796 0.47 +0.7
2,964,521 + Dsui_2796 0.54 +0.5
2,964,600 - Dsui_2796 0.65 -1.9
2,964,651 + Dsui_2796 0.72 +1.0
2,964,732 + Dsui_2796 0.82 +1.3
2,964,750 + Dsui_2796 0.85 +0.3
2,964,758 - -1.9
2,964,910 - -3.4
2,964,937 + +1.2
2,964,976 - -2.8
2,965,072 + -0.2
2,965,080 - -2.4
2,965,180 - -3.0
2,965,214 - -3.4
2,965,256 + Dsui_2797 0.11 -2.8
2,965,447 + Dsui_2797 0.22 -1.4
2,965,454 + Dsui_2797 0.22 -2.9
2,965,558 + Dsui_2797 0.28 -0.7
2,965,584 + Dsui_2797 0.29 -2.8
2,965,584 + Dsui_2797 0.29 -1.3
2,965,592 - Dsui_2797 0.30 -2.5
2,965,649 + Dsui_2797 0.33 -3.3
2,965,748 + Dsui_2797 0.38 -2.3
2,965,868 + Dsui_2797 0.45 -1.5
2,965,942 + Dsui_2797 0.49 -1.5
2,965,981 + Dsui_2797 0.51 -1.1
2,965,981 + Dsui_2797 0.51 -3.0
2,966,059 + Dsui_2797 0.55 -3.2
2,966,067 - Dsui_2797 0.56 -2.5
2,966,098 + Dsui_2797 0.58 -2.4
2,966,224 + Dsui_2797 0.64 -1.8
2,966,254 + Dsui_2797 0.66 -2.2
2,966,261 - Dsui_2797 0.67 -3.6
2,966,261 - Dsui_2797 0.67 +0.9
2,966,262 - Dsui_2797 0.67 -1.6
2,966,546 - -1.1
2,966,657 - Dsui_2797 0.88 +0.9
2,966,657 - Dsui_2797 0.88 -0.2
2,966,694 - -2.8
2,966,715 - -0.4
2,966,715 - -0.3
2,966,738 + +1.0
2,966,746 - +0.1
2,966,813 - -0.9
2,966,981 - -0.4
2,967,011 + +1.1
2,967,011 + -0.6
2,967,019 - -0.1
2,967,019 - +0.1
2,967,063 + -0.7
2,967,180 - +0.5
2,967,245 + +1.2
2,967,280 + +0.9
2,967,288 - Dsui_2798 0.10 +0.8
2,967,312 - Dsui_2798 0.12 +0.9
2,967,315 + Dsui_2798 0.13 +1.2
2,967,789 + Dsui_2798 0.51 +0.1
2,967,789 + Dsui_2798 0.51 -1.0

Or see this region's nucleotide sequence