Strain Fitness in Dechlorosoma suillum PS around Dsui_2750

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2749 and Dsui_2750 are separated by 136 nucleotidesDsui_2750 and Dsui_2751 are separated by 76 nucleotides Dsui_2749: Dsui_2749 - putative acyltransferase, at 2,904,360 to 2,905,478 _2749 Dsui_2750: Dsui_2750 - cyanophycin synthetase, at 2,905,615 to 2,908,200 _2750 Dsui_2751: Dsui_2751 - cyanophycin synthetase, at 2,908,277 to 2,910,445 _2751 Position (kb) 2905 2906 2907 2908 2909Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2904.636 kb on - strand, within Dsui_2749at 2904.669 kb on + strand, within Dsui_2749at 2904.677 kb on - strand, within Dsui_2749at 2904.677 kb on - strand, within Dsui_2749at 2904.677 kb on - strand, within Dsui_2749at 2904.677 kb on - strand, within Dsui_2749at 2904.810 kb on - strand, within Dsui_2749at 2904.884 kb on - strand, within Dsui_2749at 2904.905 kb on + strand, within Dsui_2749at 2904.913 kb on - strand, within Dsui_2749at 2904.984 kb on - strand, within Dsui_2749at 2905.080 kb on + strand, within Dsui_2749at 2905.102 kb on + strand, within Dsui_2749at 2905.143 kb on - strand, within Dsui_2749at 2905.146 kb on + strand, within Dsui_2749at 2905.221 kb on - strand, within Dsui_2749at 2905.221 kb on - strand, within Dsui_2749at 2905.307 kb on + strand, within Dsui_2749at 2905.315 kb on - strand, within Dsui_2749at 2905.403 kb on - strandat 2905.433 kb on + strandat 2905.482 kb on + strandat 2905.613 kb on + strandat 2905.703 kb on - strandat 2905.705 kb on + strandat 2905.705 kb on + strandat 2905.713 kb on - strandat 2905.746 kb on + strandat 2905.843 kb on - strandat 2906.092 kb on - strand, within Dsui_2750at 2906.135 kb on - strand, within Dsui_2750at 2906.193 kb on - strand, within Dsui_2750at 2906.232 kb on - strand, within Dsui_2750at 2906.350 kb on + strandat 2906.350 kb on + strand, within Dsui_2750at 2906.465 kb on + strand, within Dsui_2750at 2906.467 kb on - strand, within Dsui_2750at 2906.473 kb on - strand, within Dsui_2750at 2906.478 kb on - strand, within Dsui_2750at 2906.541 kb on - strand, within Dsui_2750at 2906.662 kb on + strandat 2906.719 kb on - strand, within Dsui_2750at 2906.841 kb on - strand, within Dsui_2750at 2906.957 kb on - strand, within Dsui_2750at 2907.070 kb on + strand, within Dsui_2750at 2907.121 kb on - strand, within Dsui_2750at 2907.428 kb on + strand, within Dsui_2750at 2907.572 kb on + strand, within Dsui_2750at 2907.572 kb on + strand, within Dsui_2750at 2907.663 kb on + strand, within Dsui_2750at 2907.668 kb on + strandat 2907.671 kb on - strand, within Dsui_2750at 2907.671 kb on - strand, within Dsui_2750at 2907.703 kb on - strand, within Dsui_2750at 2907.786 kb on - strand, within Dsui_2750at 2907.811 kb on + strandat 2907.902 kb on - strand, within Dsui_2750at 2907.921 kb on - strand, within Dsui_2750at 2907.964 kb on + strandat 2908.169 kb on - strandat 2908.169 kb on - strandat 2908.184 kb on - strandat 2908.244 kb on + strandat 2908.295 kb on + strandat 2908.303 kb on - strandat 2908.357 kb on - strandat 2908.466 kb on + strandat 2908.532 kb on - strand, within Dsui_2751at 2908.662 kb on + strandat 2908.672 kb on - strand, within Dsui_2751at 2908.866 kb on + strand, within Dsui_2751at 2908.874 kb on - strand, within Dsui_2751at 2908.896 kb on - strand, within Dsui_2751at 2909.048 kb on - strand, within Dsui_2751at 2909.060 kb on - strand, within Dsui_2751at 2909.156 kb on - strand, within Dsui_2751at 2909.156 kb on - strand, within Dsui_2751at 2909.168 kb on - strand, within Dsui_2751at 2909.181 kb on - strand, within Dsui_2751

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
remove
2,904,636 - Dsui_2749 0.25 +1.5
2,904,669 + Dsui_2749 0.28 -2.4
2,904,677 - Dsui_2749 0.28 +1.6
2,904,677 - Dsui_2749 0.28 +1.0
2,904,677 - Dsui_2749 0.28 +0.6
2,904,677 - Dsui_2749 0.28 +1.2
2,904,810 - Dsui_2749 0.40 +1.4
2,904,884 - Dsui_2749 0.47 +0.4
2,904,905 + Dsui_2749 0.49 +1.2
2,904,913 - Dsui_2749 0.49 +0.6
2,904,984 - Dsui_2749 0.56 +2.1
2,905,080 + Dsui_2749 0.64 +0.2
2,905,102 + Dsui_2749 0.66 -0.4
2,905,143 - Dsui_2749 0.70 +1.4
2,905,146 + Dsui_2749 0.70 -0.9
2,905,221 - Dsui_2749 0.77 +0.4
2,905,221 - Dsui_2749 0.77 -0.1
2,905,307 + Dsui_2749 0.85 -0.9
2,905,315 - Dsui_2749 0.85 +1.4
2,905,403 - -0.3
2,905,433 + +1.6
2,905,482 + +0.9
2,905,613 + -1.1
2,905,703 - +1.2
2,905,705 + +1.1
2,905,705 + +1.9
2,905,713 - +1.7
2,905,746 + +1.9
2,905,843 - +1.2
2,906,092 - Dsui_2750 0.18 +1.4
2,906,135 - Dsui_2750 0.20 +2.5
2,906,193 - Dsui_2750 0.22 +2.7
2,906,232 - Dsui_2750 0.24 +1.1
2,906,350 + -1.3
2,906,350 + Dsui_2750 0.28 +0.3
2,906,465 + Dsui_2750 0.33 -0.1
2,906,467 - Dsui_2750 0.33 +2.7
2,906,473 - Dsui_2750 0.33 +2.3
2,906,478 - Dsui_2750 0.33 +1.1
2,906,541 - Dsui_2750 0.36 +0.1
2,906,662 + -2.8
2,906,719 - Dsui_2750 0.43 +4.6
2,906,841 - Dsui_2750 0.47 +3.1
2,906,957 - Dsui_2750 0.52 +2.8
2,907,070 + Dsui_2750 0.56 -1.0
2,907,121 - Dsui_2750 0.58 +1.6
2,907,428 + Dsui_2750 0.70 +0.9
2,907,572 + Dsui_2750 0.76 -2.2
2,907,572 + Dsui_2750 0.76 +1.0
2,907,663 + Dsui_2750 0.79 +1.0
2,907,668 + +2.5
2,907,671 - Dsui_2750 0.80 +1.0
2,907,671 - Dsui_2750 0.80 +1.3
2,907,703 - Dsui_2750 0.81 +0.7
2,907,786 - Dsui_2750 0.84 +1.4
2,907,811 + -1.5
2,907,902 - Dsui_2750 0.88 +1.8
2,907,921 - Dsui_2750 0.89 +1.6
2,907,964 + +2.4
2,908,169 - +0.9
2,908,169 - +0.8
2,908,184 - +1.2
2,908,244 + +2.4
2,908,295 + +3.0
2,908,303 - +0.9
2,908,357 - +1.6
2,908,466 + -1.8
2,908,532 - Dsui_2751 0.12 +0.8
2,908,662 + -0.6
2,908,672 - Dsui_2751 0.18 +0.8
2,908,866 + Dsui_2751 0.27 -1.6
2,908,874 - Dsui_2751 0.28 +0.1
2,908,896 - Dsui_2751 0.29 +1.4
2,909,048 - Dsui_2751 0.36 +2.0
2,909,060 - Dsui_2751 0.36 +0.7
2,909,156 - Dsui_2751 0.41 +1.3
2,909,156 - Dsui_2751 0.41 +1.5
2,909,168 - Dsui_2751 0.41 +0.8
2,909,181 - Dsui_2751 0.42 +0.9

Or see this region's nucleotide sequence