Strain Fitness in Dechlorosoma suillum PS around Dsui_2717

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2713 and Dsui_2714 are separated by 60 nucleotidesDsui_2714 and Dsui_2715 are separated by 14 nucleotidesDsui_2715 and Dsui_2716 are separated by 36 nucleotidesDsui_2716 and Dsui_2717 are separated by 143 nucleotidesDsui_2717 and Dsui_2718 are separated by 115 nucleotides Dsui_2713: Dsui_2713 - membrane protease subunit, stomatin/prohibitin, at 2,870,148 to 2,871,041 _2713 Dsui_2714: Dsui_2714 - tRNA-His, at 2,871,102 to 2,871,177 _2714 Dsui_2715: Dsui_2715 - tRNA-Arg, at 2,871,192 to 2,871,268 _2715 Dsui_2716: Dsui_2716 - tRNA-Pro, at 2,871,305 to 2,871,381 _2716 Dsui_2717: Dsui_2717 - RNA polymerase-binding protein DksA, at 2,871,525 to 2,871,950 _2717 Dsui_2718: Dsui_2718 - polyribonucleotide nucleotidyltransferase, at 2,872,066 to 2,874,189 _2718 Position (kb) 2871 2872Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2870.574 kb on + strand, within Dsui_2713at 2870.628 kb on - strand, within Dsui_2713at 2870.656 kb on - strand, within Dsui_2713at 2870.726 kb on + strand, within Dsui_2713at 2870.726 kb on + strand, within Dsui_2713at 2870.818 kb on - strand, within Dsui_2713at 2870.878 kb on - strand, within Dsui_2713at 2870.992 kb on + strandat 2871.000 kb on - strandat 2871.009 kb on + strandat 2871.295 kb on - strandat 2871.528 kb on + strandat 2871.585 kb on + strand, within Dsui_2717at 2871.644 kb on + strand, within Dsui_2717at 2871.669 kb on + strand, within Dsui_2717at 2871.696 kb on + strand, within Dsui_2717at 2871.742 kb on + strand, within Dsui_2717at 2871.870 kb on + strand, within Dsui_2717at 2872.321 kb on - strand, within Dsui_2718at 2872.327 kb on - strand, within Dsui_2718

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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2,870,574 + Dsui_2713 0.48 +0.4
2,870,628 - Dsui_2713 0.54 +0.3
2,870,656 - Dsui_2713 0.57 +0.2
2,870,726 + Dsui_2713 0.65 -0.8
2,870,726 + Dsui_2713 0.65 +0.6
2,870,818 - Dsui_2713 0.75 +1.3
2,870,878 - Dsui_2713 0.82 +0.9
2,870,992 + +0.4
2,871,000 - +0.7
2,871,009 + +0.7
2,871,295 - +0.1
2,871,528 + +1.2
2,871,585 + Dsui_2717 0.14 -3.9
2,871,644 + Dsui_2717 0.28 -1.6
2,871,669 + Dsui_2717 0.34 +0.2
2,871,696 + Dsui_2717 0.40 +1.2
2,871,742 + Dsui_2717 0.51 -2.7
2,871,870 + Dsui_2717 0.81 -2.2
2,872,321 - Dsui_2718 0.12 +0.7
2,872,327 - Dsui_2718 0.12 +0.8

Or see this region's nucleotide sequence