Strain Fitness in Dechlorosoma suillum PS around Dsui_2704

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2703 and Dsui_2704 are separated by 448 nucleotidesDsui_2704 and Dsui_2705 are separated by 106 nucleotides Dsui_2703: Dsui_2703 - chromosome segregation protein SMC, at 2,856,956 to 2,860,465 _2703 Dsui_2704: Dsui_2704 - yecA family protein, at 2,860,914 to 2,861,612 _2704 Dsui_2705: Dsui_2705 - permease, at 2,861,719 to 2,863,008 _2705 Position (kb) 2860 2861 2862Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2860.028 kb on - strand, within Dsui_2703at 2860.028 kb on - strand, within Dsui_2703at 2860.484 kb on - strandat 2860.598 kb on - strandat 2860.648 kb on + strandat 2860.899 kb on + strandat 2860.907 kb on - strandat 2860.950 kb on + strandat 2861.079 kb on + strand, within Dsui_2704at 2861.093 kb on - strandat 2861.404 kb on + strand, within Dsui_2704at 2861.426 kb on + strand, within Dsui_2704at 2861.584 kb on + strandat 2861.627 kb on - strandat 2861.627 kb on - strandat 2861.657 kb on + strandat 2861.746 kb on + strandat 2861.751 kb on + strandat 2861.792 kb on - strandat 2862.036 kb on - strandat 2862.329 kb on + strandat 2862.456 kb on - strandat 2862.573 kb on + strand, within Dsui_2705at 2862.593 kb on + strand, within Dsui_2705

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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2,860,028 - Dsui_2703 0.88 -3.4
2,860,028 - Dsui_2703 0.88 +1.3
2,860,484 - +0.5
2,860,598 - +1.0
2,860,648 + +1.8
2,860,899 + +1.4
2,860,907 - -0.1
2,860,950 + +2.0
2,861,079 + Dsui_2704 0.24 +1.5
2,861,093 - -1.9
2,861,404 + Dsui_2704 0.70 +1.7
2,861,426 + Dsui_2704 0.73 +1.4
2,861,584 + -0.4
2,861,627 - +1.4
2,861,627 - -2.3
2,861,657 + +0.6
2,861,746 + +1.5
2,861,751 + +2.6
2,861,792 - +1.1
2,862,036 - -1.9
2,862,329 + +1.5
2,862,456 - -2.0
2,862,573 + Dsui_2705 0.66 +1.4
2,862,593 + Dsui_2705 0.68 +1.6

Or see this region's nucleotide sequence