Strain Fitness in Dechlorosoma suillum PS around Dsui_2697

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2696 and Dsui_2697 are separated by 57 nucleotidesDsui_2697 and Dsui_2698 are separated by 2 nucleotidesDsui_2698 and Dsui_2699 are separated by 51 nucleotides Dsui_2696: Dsui_2696 - (protein-PII) uridylyltransferase, at 2,847,694 to 2,850,285 _2696 Dsui_2697: Dsui_2697 - peptide deformylase, at 2,850,343 to 2,850,891 _2697 Dsui_2698: Dsui_2698 - purine nucleoside phosphorylase, at 2,850,894 to 2,851,646 _2698 Dsui_2699: Dsui_2699 - hypoxanthine-guanine phosphoribosyltransferase, at 2,851,698 to 2,852,246 _2699 Position (kb) 2850 2851Strain fitness (log2 ratio) -3 -2 -1 0 1at 2849.376 kb on - strand, within Dsui_2696at 2849.420 kb on + strand, within Dsui_2696at 2849.428 kb on - strand, within Dsui_2696at 2849.428 kb on - strandat 2849.463 kb on + strand, within Dsui_2696at 2849.498 kb on - strand, within Dsui_2696at 2849.584 kb on + strand, within Dsui_2696at 2849.695 kb on + strand, within Dsui_2696at 2849.772 kb on - strand, within Dsui_2696at 2849.855 kb on - strand, within Dsui_2696at 2849.890 kb on - strand, within Dsui_2696at 2849.890 kb on - strand, within Dsui_2696at 2849.952 kb on + strand, within Dsui_2696at 2850.050 kb on - strandat 2850.124 kb on + strandat 2850.124 kb on + strandat 2850.221 kb on + strandat 2850.221 kb on + strandat 2850.281 kb on - strandat 2850.293 kb on - strandat 2850.299 kb on - strandat 2850.462 kb on + strand, within Dsui_2697at 2850.470 kb on - strand, within Dsui_2697at 2850.490 kb on - strand, within Dsui_2697at 2850.584 kb on - strand, within Dsui_2697at 2850.619 kb on + strandat 2850.674 kb on - strand, within Dsui_2697at 2850.722 kb on - strand, within Dsui_2697at 2850.821 kb on - strand, within Dsui_2697at 2851.056 kb on - strand, within Dsui_2698at 2851.114 kb on + strand, within Dsui_2698at 2851.114 kb on + strandat 2851.132 kb on + strand, within Dsui_2698at 2851.163 kb on + strand, within Dsui_2698at 2851.182 kb on + strand, within Dsui_2698at 2851.263 kb on + strandat 2851.517 kb on - strand, within Dsui_2698at 2851.547 kb on + strand, within Dsui_2698at 2851.614 kb on + strandat 2851.621 kb on - strandat 2851.622 kb on - strandat 2851.864 kb on + strandat 2851.864 kb on + strand, within Dsui_2699

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
remove
2,849,376 - Dsui_2696 0.65 +0.1
2,849,420 + Dsui_2696 0.67 -0.1
2,849,428 - Dsui_2696 0.67 +0.8
2,849,428 - -0.7
2,849,463 + Dsui_2696 0.68 +1.2
2,849,498 - Dsui_2696 0.70 -2.8
2,849,584 + Dsui_2696 0.73 +0.0
2,849,695 + Dsui_2696 0.77 +0.7
2,849,772 - Dsui_2696 0.80 -2.1
2,849,855 - Dsui_2696 0.83 -2.0
2,849,890 - Dsui_2696 0.85 -1.0
2,849,890 - Dsui_2696 0.85 +0.4
2,849,952 + Dsui_2696 0.87 -0.9
2,850,050 - -1.0
2,850,124 + -0.6
2,850,124 + -1.3
2,850,221 + +0.2
2,850,221 + -1.3
2,850,281 - +1.0
2,850,293 - +1.5
2,850,299 - +0.2
2,850,462 + Dsui_2697 0.22 +0.1
2,850,470 - Dsui_2697 0.23 +0.6
2,850,490 - Dsui_2697 0.27 +1.4
2,850,584 - Dsui_2697 0.44 -0.7
2,850,619 + -0.4
2,850,674 - Dsui_2697 0.60 +1.7
2,850,722 - Dsui_2697 0.69 +1.7
2,850,821 - Dsui_2697 0.87 +1.4
2,851,056 - Dsui_2698 0.22 -1.2
2,851,114 + Dsui_2698 0.29 -3.5
2,851,114 + -2.8
2,851,132 + Dsui_2698 0.32 -2.3
2,851,163 + Dsui_2698 0.36 -2.9
2,851,182 + Dsui_2698 0.38 -3.6
2,851,263 + -3.0
2,851,517 - Dsui_2698 0.83 -1.6
2,851,547 + Dsui_2698 0.87 -1.9
2,851,614 + +0.2
2,851,621 - -1.1
2,851,622 - -0.9
2,851,864 + -1.5
2,851,864 + Dsui_2699 0.30 -2.7

Or see this region's nucleotide sequence