Strain Fitness in Dechlorosoma suillum PS around Dsui_2615

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2613 and Dsui_2614 are separated by 48 nucleotidesDsui_2614 and Dsui_2615 overlap by 4 nucleotidesDsui_2615 and Dsui_2616 overlap by 10 nucleotidesDsui_2616 and Dsui_2617 are separated by 477 nucleotides Dsui_2613: Dsui_2613 - integrating conjugative element protein, PFL_4669 family, at 2,766,194 to 2,767,207 _2613 Dsui_2614: Dsui_2614 - hypothetical protein, at 2,767,256 to 2,768,056 _2614 Dsui_2615: Dsui_2615 - hypothetical protein, at 2,768,053 to 2,769,579 _2615 Dsui_2616: Dsui_2616 - hypothetical protein, at 2,769,570 to 2,769,788 _2616 Dsui_2617: Dsui_2617 - DNA recombination-dependent growth factor C, at 2,770,266 to 2,771,168 _2617 Position (kb) 2768 2769 2770Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2767.067 kb on + strandat 2767.144 kb on + strandat 2767.262 kb on - strandat 2767.597 kb on + strand, within Dsui_2614at 2767.597 kb on + strand, within Dsui_2614at 2767.606 kb on - strand, within Dsui_2614at 2767.716 kb on + strand, within Dsui_2614at 2767.764 kb on - strand, within Dsui_2614at 2767.948 kb on - strand, within Dsui_2614at 2767.985 kb on + strandat 2768.093 kb on + strandat 2768.185 kb on - strandat 2768.187 kb on + strandat 2768.240 kb on + strand, within Dsui_2615at 2768.247 kb on - strand, within Dsui_2615at 2768.247 kb on - strand, within Dsui_2615at 2768.300 kb on + strandat 2768.467 kb on + strand, within Dsui_2615at 2768.516 kb on + strand, within Dsui_2615at 2768.546 kb on + strand, within Dsui_2615at 2768.570 kb on + strand, within Dsui_2615at 2768.570 kb on + strand, within Dsui_2615at 2768.586 kb on + strand, within Dsui_2615at 2768.603 kb on + strand, within Dsui_2615at 2768.661 kb on + strand, within Dsui_2615at 2768.674 kb on - strand, within Dsui_2615at 2768.725 kb on + strand, within Dsui_2615at 2768.733 kb on - strand, within Dsui_2615at 2768.751 kb on + strand, within Dsui_2615at 2768.751 kb on + strand, within Dsui_2615at 2768.751 kb on + strand, within Dsui_2615at 2768.824 kb on - strandat 2769.022 kb on - strand, within Dsui_2615at 2769.057 kb on + strand, within Dsui_2615at 2769.144 kb on + strand, within Dsui_2615at 2769.160 kb on + strand, within Dsui_2615at 2769.181 kb on + strand, within Dsui_2615at 2769.189 kb on - strand, within Dsui_2615at 2769.418 kb on + strandat 2769.428 kb on + strandat 2769.428 kb on + strandat 2769.428 kb on + strandat 2769.428 kb on + strandat 2769.428 kb on + strandat 2769.436 kb on - strandat 2769.436 kb on - strandat 2769.443 kb on + strandat 2769.473 kb on - strandat 2769.533 kb on + strandat 2769.533 kb on + strandat 2769.533 kb on + strandat 2769.541 kb on - strandat 2769.541 kb on - strandat 2769.552 kb on + strandat 2769.552 kb on + strandat 2769.652 kb on + strand, within Dsui_2616at 2769.667 kb on + strand, within Dsui_2616at 2769.701 kb on + strand, within Dsui_2616at 2769.763 kb on - strand, within Dsui_2616at 2769.796 kb on - strandat 2769.933 kb on + strandat 2769.983 kb on - strandat 2770.000 kb on - strandat 2770.116 kb on - strandat 2770.142 kb on + strandat 2770.161 kb on + strandat 2770.206 kb on + strandat 2770.260 kb on - strandat 2770.272 kb on - strandat 2770.340 kb on - strandat 2770.520 kb on + strand, within Dsui_2617

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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2,767,067 + +2.4
2,767,144 + -3.0
2,767,262 - -0.9
2,767,597 + Dsui_2614 0.43 +0.7
2,767,597 + Dsui_2614 0.43 -2.2
2,767,606 - Dsui_2614 0.44 -2.0
2,767,716 + Dsui_2614 0.57 -1.6
2,767,764 - Dsui_2614 0.63 -3.7
2,767,948 - Dsui_2614 0.86 -0.6
2,767,985 + +1.9
2,768,093 + -2.0
2,768,185 - +0.9
2,768,187 + -1.7
2,768,240 + Dsui_2615 0.12 +1.1
2,768,247 - Dsui_2615 0.13 -2.0
2,768,247 - Dsui_2615 0.13 -1.0
2,768,300 + -1.9
2,768,467 + Dsui_2615 0.27 -0.1
2,768,516 + Dsui_2615 0.30 -2.3
2,768,546 + Dsui_2615 0.32 -1.4
2,768,570 + Dsui_2615 0.34 -4.6
2,768,570 + Dsui_2615 0.34 -2.6
2,768,586 + Dsui_2615 0.35 +0.1
2,768,603 + Dsui_2615 0.36 -1.9
2,768,661 + Dsui_2615 0.40 +1.1
2,768,674 - Dsui_2615 0.41 +1.6
2,768,725 + Dsui_2615 0.44 -0.2
2,768,733 - Dsui_2615 0.45 -2.2
2,768,751 + Dsui_2615 0.46 -2.3
2,768,751 + Dsui_2615 0.46 -0.4
2,768,751 + Dsui_2615 0.46 -0.4
2,768,824 - -1.9
2,769,022 - Dsui_2615 0.63 -2.9
2,769,057 + Dsui_2615 0.66 -0.9
2,769,144 + Dsui_2615 0.71 -2.8
2,769,160 + Dsui_2615 0.72 -2.7
2,769,181 + Dsui_2615 0.74 +1.1
2,769,189 - Dsui_2615 0.74 -0.2
2,769,418 + -2.4
2,769,428 + -2.0
2,769,428 + -1.1
2,769,428 + -0.9
2,769,428 + -1.7
2,769,428 + -1.4
2,769,436 - -1.7
2,769,436 - +1.3
2,769,443 + -0.1
2,769,473 - -3.3
2,769,533 + -1.2
2,769,533 + -0.8
2,769,533 + -1.9
2,769,541 - -1.7
2,769,541 - +0.1
2,769,552 + -3.4
2,769,552 + -0.5
2,769,652 + Dsui_2616 0.37 -1.2
2,769,667 + Dsui_2616 0.44 -2.7
2,769,701 + Dsui_2616 0.60 -1.4
2,769,763 - Dsui_2616 0.88 -1.3
2,769,796 - -0.5
2,769,933 + -0.4
2,769,983 - -2.5
2,770,000 - -1.5
2,770,116 - -2.2
2,770,142 + -0.8
2,770,161 + -3.7
2,770,206 + -0.9
2,770,260 - +3.4
2,770,272 - -0.2
2,770,340 - +0.1
2,770,520 + Dsui_2617 0.28 -1.7

Or see this region's nucleotide sequence