Strain Fitness in Dechlorosoma suillum PS around Dsui_2604

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2603 and Dsui_2604 are separated by 358 nucleotidesDsui_2604 and Dsui_2605 are separated by 28 nucleotides Dsui_2603: Dsui_2603 - hypothetical protein, at 2,758,719 to 2,759,090 _2603 Dsui_2604: Dsui_2604 - hypothetical protein, at 2,759,449 to 2,759,643 _2604 Dsui_2605: Dsui_2605 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,759,672 to 2,761,408 _2605 Position (kb) 2759 2760Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2758.475 kb on - strandat 2758.659 kb on + strandat 2758.674 kb on + strandat 2758.796 kb on + strand, within Dsui_2603at 2758.817 kb on + strandat 2758.825 kb on - strand, within Dsui_2603at 2758.876 kb on + strand, within Dsui_2603at 2758.884 kb on - strand, within Dsui_2603at 2758.930 kb on + strand, within Dsui_2603at 2758.930 kb on + strand, within Dsui_2603at 2758.938 kb on - strand, within Dsui_2603at 2758.938 kb on - strand, within Dsui_2603at 2758.938 kb on - strand, within Dsui_2603at 2758.938 kb on - strand, within Dsui_2603at 2758.938 kb on - strand, within Dsui_2603at 2758.957 kb on + strand, within Dsui_2603at 2758.957 kb on + strand, within Dsui_2603at 2758.958 kb on + strandat 2758.985 kb on + strand, within Dsui_2603at 2759.054 kb on - strandat 2759.079 kb on - strandat 2759.133 kb on - strandat 2759.222 kb on - strandat 2759.239 kb on - strandat 2759.239 kb on - strandat 2759.239 kb on - strandat 2759.368 kb on - strandat 2759.368 kb on - strandat 2759.453 kb on - strandat 2759.453 kb on - strandat 2759.482 kb on + strandat 2759.524 kb on - strand, within Dsui_2604at 2759.544 kb on - strand, within Dsui_2604at 2759.603 kb on - strand, within Dsui_2604at 2759.603 kb on - strand, within Dsui_2604at 2759.603 kb on - strand, within Dsui_2604at 2759.613 kb on - strand, within Dsui_2604at 2759.620 kb on - strand, within Dsui_2604at 2759.622 kb on - strand, within Dsui_2604at 2759.742 kb on - strandat 2759.778 kb on - strandat 2759.839 kb on + strandat 2759.839 kb on + strandat 2759.839 kb on + strandat 2759.847 kb on - strand, within Dsui_2605at 2759.847 kb on - strand, within Dsui_2605at 2759.847 kb on - strand, within Dsui_2605at 2759.847 kb on - strand, within Dsui_2605at 2759.847 kb on - strand, within Dsui_2605at 2760.047 kb on + strand, within Dsui_2605at 2760.101 kb on - strand, within Dsui_2605at 2760.306 kb on + strand, within Dsui_2605at 2760.384 kb on - strand, within Dsui_2605at 2760.396 kb on - strand, within Dsui_2605at 2760.407 kb on + strand, within Dsui_2605at 2760.516 kb on + strand, within Dsui_2605at 2760.550 kb on - strand, within Dsui_2605

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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2,758,475 - +2.3
2,758,659 + -0.5
2,758,674 + -2.7
2,758,796 + Dsui_2603 0.21 -0.6
2,758,817 + -2.2
2,758,825 - Dsui_2603 0.28 -0.9
2,758,876 + Dsui_2603 0.42 -1.2
2,758,884 - Dsui_2603 0.44 +0.7
2,758,930 + Dsui_2603 0.57 +0.5
2,758,930 + Dsui_2603 0.57 -1.8
2,758,938 - Dsui_2603 0.59 +1.8
2,758,938 - Dsui_2603 0.59 -0.0
2,758,938 - Dsui_2603 0.59 -0.0
2,758,938 - Dsui_2603 0.59 -1.1
2,758,938 - Dsui_2603 0.59 +1.3
2,758,957 + Dsui_2603 0.64 +0.1
2,758,957 + Dsui_2603 0.64 -2.8
2,758,958 + -2.7
2,758,985 + Dsui_2603 0.72 -2.6
2,759,054 - -2.7
2,759,079 - +0.6
2,759,133 - -0.5
2,759,222 - -1.9
2,759,239 - -0.5
2,759,239 - -3.2
2,759,239 - +0.8
2,759,368 - -2.1
2,759,368 - +2.2
2,759,453 - -2.5
2,759,453 - -1.5
2,759,482 + -0.9
2,759,524 - Dsui_2604 0.38 -1.9
2,759,544 - Dsui_2604 0.49 -2.1
2,759,603 - Dsui_2604 0.79 -0.6
2,759,603 - Dsui_2604 0.79 -2.5
2,759,603 - Dsui_2604 0.79 -1.2
2,759,613 - Dsui_2604 0.84 -1.9
2,759,620 - Dsui_2604 0.88 -0.4
2,759,622 - Dsui_2604 0.89 -0.5
2,759,742 - -3.3
2,759,778 - -0.2
2,759,839 + -3.4
2,759,839 + -2.6
2,759,839 + -1.4
2,759,847 - Dsui_2605 0.10 -1.8
2,759,847 - Dsui_2605 0.10 -1.6
2,759,847 - Dsui_2605 0.10 +1.1
2,759,847 - Dsui_2605 0.10 -0.9
2,759,847 - Dsui_2605 0.10 -2.4
2,760,047 + Dsui_2605 0.22 +0.4
2,760,101 - Dsui_2605 0.25 -1.8
2,760,306 + Dsui_2605 0.36 -2.1
2,760,384 - Dsui_2605 0.41 -1.7
2,760,396 - Dsui_2605 0.42 -0.5
2,760,407 + Dsui_2605 0.42 -0.5
2,760,516 + Dsui_2605 0.49 -0.2
2,760,550 - Dsui_2605 0.51 -1.7

Or see this region's nucleotide sequence