Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2577 and Dsui_2578 are separated by 349 nucleotides Dsui_2578 and Dsui_2579 are separated by 14 nucleotides
Dsui_2577: Dsui_2577 - type IV secretory pathway, VirB4 component, at 2,726,787 to 2,729,378
_2577
Dsui_2578: Dsui_2578 - hypothetical protein, at 2,729,728 to 2,730,057
_2578
Dsui_2579: Dsui_2579 - Flp pilus assembly protein, ATPase CpaF, at 2,730,072 to 2,731,124
_2579
Position (kb)
2729
2730
2731 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2728.898 kb on - strand at 2728.909 kb on + strand, within Dsui_2577 at 2728.944 kb on + strand, within Dsui_2577 at 2728.963 kb on + strand, within Dsui_2577 at 2728.963 kb on + strand, within Dsui_2577 at 2728.963 kb on + strand, within Dsui_2577 at 2728.966 kb on - strand, within Dsui_2577 at 2729.093 kb on + strand, within Dsui_2577 at 2729.219 kb on + strand at 2729.317 kb on - strand at 2729.349 kb on + strand at 2729.408 kb on + strand at 2729.538 kb on + strand at 2729.546 kb on - strand at 2729.553 kb on - strand at 2729.556 kb on - strand at 2729.614 kb on + strand at 2729.651 kb on - strand at 2729.697 kb on + strand at 2729.735 kb on + strand at 2729.735 kb on + strand at 2729.743 kb on - strand at 2729.819 kb on + strand, within Dsui_2578 at 2729.827 kb on - strand, within Dsui_2578 at 2729.827 kb on - strand, within Dsui_2578 at 2729.827 kb on - strand, within Dsui_2578 at 2729.894 kb on + strand, within Dsui_2578 at 2730.146 kb on + strand at 2730.170 kb on - strand at 2730.172 kb on - strand at 2730.256 kb on + strand, within Dsui_2579 at 2730.299 kb on - strand, within Dsui_2579 at 2730.428 kb on + strand, within Dsui_2579 at 2730.475 kb on + strand, within Dsui_2579 at 2730.542 kb on + strand, within Dsui_2579 at 2730.563 kb on + strand, within Dsui_2579 at 2730.577 kb on - strand, within Dsui_2579 at 2730.647 kb on + strand, within Dsui_2579 at 2730.737 kb on + strand, within Dsui_2579 at 2730.777 kb on + strand, within Dsui_2579 at 2730.777 kb on + strand, within Dsui_2579 at 2730.782 kb on + strand, within Dsui_2579 at 2730.817 kb on + strand, within Dsui_2579 at 2730.817 kb on + strand, within Dsui_2579 at 2730.819 kb on + strand, within Dsui_2579 at 2730.844 kb on + strand, within Dsui_2579 at 2730.863 kb on + strand, within Dsui_2579 at 2730.904 kb on + strand, within Dsui_2579 at 2730.930 kb on + strand, within Dsui_2579 at 2730.940 kb on + strand, within Dsui_2579 at 2730.948 kb on - strand, within Dsui_2579 at 2731.032 kb on + strand at 2731.032 kb on + strand at 2731.032 kb on + strand at 2731.040 kb on - strand at 2731.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate remove 2,728,898 - -1.9 2,728,909 + Dsui_2577 0.82 -2.8 2,728,944 + Dsui_2577 0.83 -0.9 2,728,963 + Dsui_2577 0.84 -2.8 2,728,963 + Dsui_2577 0.84 -0.3 2,728,963 + Dsui_2577 0.84 -2.8 2,728,966 - Dsui_2577 0.84 -0.6 2,729,093 + Dsui_2577 0.89 -2.7 2,729,219 + +0.2 2,729,317 - -2.6 2,729,349 + -0.4 2,729,408 + -0.8 2,729,538 + -0.3 2,729,546 - -0.9 2,729,553 - -2.6 2,729,556 - -0.9 2,729,614 + -2.2 2,729,651 - +0.1 2,729,697 + -1.1 2,729,735 + -1.2 2,729,735 + -3.5 2,729,743 - -1.5 2,729,819 + Dsui_2578 0.28 +0.1 2,729,827 - Dsui_2578 0.30 -3.2 2,729,827 - Dsui_2578 0.30 -0.3 2,729,827 - Dsui_2578 0.30 -2.2 2,729,894 + Dsui_2578 0.50 -2.8 2,730,146 + -0.2 2,730,170 - -2.3 2,730,172 - -2.7 2,730,256 + Dsui_2579 0.17 -0.2 2,730,299 - Dsui_2579 0.22 -1.7 2,730,428 + Dsui_2579 0.34 -0.2 2,730,475 + Dsui_2579 0.38 -0.3 2,730,542 + Dsui_2579 0.45 +0.1 2,730,563 + Dsui_2579 0.47 +1.1 2,730,577 - Dsui_2579 0.48 -1.7 2,730,647 + Dsui_2579 0.55 -1.4 2,730,737 + Dsui_2579 0.63 -0.0 2,730,777 + Dsui_2579 0.67 -2.7 2,730,777 + Dsui_2579 0.67 -1.2 2,730,782 + Dsui_2579 0.67 -0.5 2,730,817 + Dsui_2579 0.71 -1.0 2,730,817 + Dsui_2579 0.71 -2.9 2,730,819 + Dsui_2579 0.71 -0.8 2,730,844 + Dsui_2579 0.73 -0.9 2,730,863 + Dsui_2579 0.75 -1.1 2,730,904 + Dsui_2579 0.79 -4.2 2,730,930 + Dsui_2579 0.81 +1.5 2,730,940 + Dsui_2579 0.82 -1.0 2,730,948 - Dsui_2579 0.83 -2.1 2,731,032 + +0.8 2,731,032 + -1.2 2,731,032 + -1.1 2,731,040 - -2.1 2,731,040 - -3.3
Or see this region's nucleotide sequence