Strain Fitness in Dechlorosoma suillum PS around Dsui_2578

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2577 and Dsui_2578 are separated by 349 nucleotidesDsui_2578 and Dsui_2579 are separated by 14 nucleotides Dsui_2577: Dsui_2577 - type IV secretory pathway, VirB4 component, at 2,726,787 to 2,729,378 _2577 Dsui_2578: Dsui_2578 - hypothetical protein, at 2,729,728 to 2,730,057 _2578 Dsui_2579: Dsui_2579 - Flp pilus assembly protein, ATPase CpaF, at 2,730,072 to 2,731,124 _2579 Position (kb) 2729 2730 2731Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2728.898 kb on - strandat 2728.909 kb on + strand, within Dsui_2577at 2728.944 kb on + strand, within Dsui_2577at 2728.963 kb on + strand, within Dsui_2577at 2728.963 kb on + strand, within Dsui_2577at 2728.963 kb on + strand, within Dsui_2577at 2728.966 kb on - strand, within Dsui_2577at 2729.093 kb on + strand, within Dsui_2577at 2729.219 kb on + strandat 2729.317 kb on - strandat 2729.349 kb on + strandat 2729.408 kb on + strandat 2729.538 kb on + strandat 2729.546 kb on - strandat 2729.553 kb on - strandat 2729.556 kb on - strandat 2729.614 kb on + strandat 2729.651 kb on - strandat 2729.697 kb on + strandat 2729.735 kb on + strandat 2729.735 kb on + strandat 2729.743 kb on - strandat 2729.819 kb on + strand, within Dsui_2578at 2729.827 kb on - strand, within Dsui_2578at 2729.827 kb on - strand, within Dsui_2578at 2729.827 kb on - strand, within Dsui_2578at 2729.894 kb on + strand, within Dsui_2578at 2730.146 kb on + strandat 2730.170 kb on - strandat 2730.172 kb on - strandat 2730.256 kb on + strand, within Dsui_2579at 2730.299 kb on - strand, within Dsui_2579at 2730.428 kb on + strand, within Dsui_2579at 2730.475 kb on + strand, within Dsui_2579at 2730.542 kb on + strand, within Dsui_2579at 2730.563 kb on + strand, within Dsui_2579at 2730.577 kb on - strand, within Dsui_2579at 2730.647 kb on + strand, within Dsui_2579at 2730.737 kb on + strand, within Dsui_2579at 2730.777 kb on + strand, within Dsui_2579at 2730.777 kb on + strand, within Dsui_2579at 2730.782 kb on + strand, within Dsui_2579at 2730.817 kb on + strand, within Dsui_2579at 2730.817 kb on + strand, within Dsui_2579at 2730.819 kb on + strand, within Dsui_2579at 2730.844 kb on + strand, within Dsui_2579at 2730.863 kb on + strand, within Dsui_2579at 2730.904 kb on + strand, within Dsui_2579at 2730.930 kb on + strand, within Dsui_2579at 2730.940 kb on + strand, within Dsui_2579at 2730.948 kb on - strand, within Dsui_2579at 2731.032 kb on + strandat 2731.032 kb on + strandat 2731.032 kb on + strandat 2731.040 kb on - strandat 2731.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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2,728,898 - -1.9
2,728,909 + Dsui_2577 0.82 -2.8
2,728,944 + Dsui_2577 0.83 -0.9
2,728,963 + Dsui_2577 0.84 -2.8
2,728,963 + Dsui_2577 0.84 -0.3
2,728,963 + Dsui_2577 0.84 -2.8
2,728,966 - Dsui_2577 0.84 -0.6
2,729,093 + Dsui_2577 0.89 -2.7
2,729,219 + +0.2
2,729,317 - -2.6
2,729,349 + -0.4
2,729,408 + -0.8
2,729,538 + -0.3
2,729,546 - -0.9
2,729,553 - -2.6
2,729,556 - -0.9
2,729,614 + -2.2
2,729,651 - +0.1
2,729,697 + -1.1
2,729,735 + -1.2
2,729,735 + -3.5
2,729,743 - -1.5
2,729,819 + Dsui_2578 0.28 +0.1
2,729,827 - Dsui_2578 0.30 -3.2
2,729,827 - Dsui_2578 0.30 -0.3
2,729,827 - Dsui_2578 0.30 -2.2
2,729,894 + Dsui_2578 0.50 -2.8
2,730,146 + -0.2
2,730,170 - -2.3
2,730,172 - -2.7
2,730,256 + Dsui_2579 0.17 -0.2
2,730,299 - Dsui_2579 0.22 -1.7
2,730,428 + Dsui_2579 0.34 -0.2
2,730,475 + Dsui_2579 0.38 -0.3
2,730,542 + Dsui_2579 0.45 +0.1
2,730,563 + Dsui_2579 0.47 +1.1
2,730,577 - Dsui_2579 0.48 -1.7
2,730,647 + Dsui_2579 0.55 -1.4
2,730,737 + Dsui_2579 0.63 -0.0
2,730,777 + Dsui_2579 0.67 -2.7
2,730,777 + Dsui_2579 0.67 -1.2
2,730,782 + Dsui_2579 0.67 -0.5
2,730,817 + Dsui_2579 0.71 -1.0
2,730,817 + Dsui_2579 0.71 -2.9
2,730,819 + Dsui_2579 0.71 -0.8
2,730,844 + Dsui_2579 0.73 -0.9
2,730,863 + Dsui_2579 0.75 -1.1
2,730,904 + Dsui_2579 0.79 -4.2
2,730,930 + Dsui_2579 0.81 +1.5
2,730,940 + Dsui_2579 0.82 -1.0
2,730,948 - Dsui_2579 0.83 -2.1
2,731,032 + +0.8
2,731,032 + -1.2
2,731,032 + -1.1
2,731,040 - -2.1
2,731,040 - -3.3

Or see this region's nucleotide sequence