Strain Fitness in Dechlorosoma suillum PS around Dsui_1876

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1873 and Dsui_1874 overlap by 1 nucleotidesDsui_1874 and Dsui_1875 are separated by 66 nucleotidesDsui_1875 and Dsui_1876 are separated by 146 nucleotidesDsui_1876 and Dsui_1877 are separated by 97 nucleotides Dsui_1873: Dsui_1873 - transcriptional regulator, at 1,972,432 to 1,973,046 _1873 Dsui_1874: Dsui_1874 - hypothetical protein, at 1,973,046 to 1,973,378 _1874 Dsui_1875: Dsui_1875 - hypothetical protein, at 1,973,445 to 1,973,618 _1875 Dsui_1876: Dsui_1876 - transcriptional regulator, at 1,973,765 to 1,974,349 _1876 Dsui_1877: Dsui_1877 - NADH:flavin oxidoreductase, at 1,974,447 to 1,975,529 _1877 Position (kb) 1973 1974 1975Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1972.859 kb on + strand, within Dsui_1873at 1972.925 kb on + strand, within Dsui_1873at 1973.055 kb on + strandat 1973.167 kb on + strand, within Dsui_1874at 1973.167 kb on + strand, within Dsui_1874at 1973.173 kb on + strand, within Dsui_1874at 1973.181 kb on - strand, within Dsui_1874at 1973.233 kb on - strand, within Dsui_1874at 1973.270 kb on - strand, within Dsui_1874at 1973.334 kb on - strand, within Dsui_1874at 1973.356 kb on + strandat 1973.438 kb on + strandat 1973.526 kb on - strand, within Dsui_1875at 1973.545 kb on - strand, within Dsui_1875at 1973.581 kb on - strand, within Dsui_1875at 1973.601 kb on + strandat 1973.601 kb on + strandat 1973.645 kb on - strandat 1973.828 kb on + strand, within Dsui_1876at 1973.892 kb on + strand, within Dsui_1876at 1974.068 kb on + strand, within Dsui_1876at 1974.142 kb on + strand, within Dsui_1876at 1974.147 kb on + strand, within Dsui_1876at 1974.224 kb on + strand, within Dsui_1876at 1974.313 kb on + strandat 1974.320 kb on + strandat 1974.367 kb on + strandat 1974.445 kb on - strandat 1974.458 kb on + strandat 1974.606 kb on + strand, within Dsui_1877at 1974.611 kb on + strand, within Dsui_1877at 1974.633 kb on + strandat 1974.660 kb on - strandat 1974.792 kb on + strandat 1974.800 kb on + strand, within Dsui_1877at 1974.929 kb on - strand, within Dsui_1877at 1975.152 kb on + strand, within Dsui_1877at 1975.262 kb on + strand, within Dsui_1877

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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1,972,859 + Dsui_1873 0.69 -1.4
1,972,925 + Dsui_1873 0.80 -2.0
1,973,055 + +0.7
1,973,167 + Dsui_1874 0.36 +1.3
1,973,167 + Dsui_1874 0.36 +1.3
1,973,173 + Dsui_1874 0.38 +1.8
1,973,181 - Dsui_1874 0.41 -0.3
1,973,233 - Dsui_1874 0.56 -1.0
1,973,270 - Dsui_1874 0.67 -0.6
1,973,334 - Dsui_1874 0.86 +0.5
1,973,356 + +0.5
1,973,438 + +0.5
1,973,526 - Dsui_1875 0.47 +1.1
1,973,545 - Dsui_1875 0.57 +0.3
1,973,581 - Dsui_1875 0.78 +1.5
1,973,601 + +0.7
1,973,601 + -0.3
1,973,645 - +0.1
1,973,828 + Dsui_1876 0.11 +2.1
1,973,892 + Dsui_1876 0.22 +1.5
1,974,068 + Dsui_1876 0.52 +1.2
1,974,142 + Dsui_1876 0.64 +2.3
1,974,147 + Dsui_1876 0.65 +1.3
1,974,224 + Dsui_1876 0.78 +1.0
1,974,313 + +0.8
1,974,320 + +0.9
1,974,367 + +1.1
1,974,445 - -3.0
1,974,458 + +2.7
1,974,606 + Dsui_1877 0.15 +0.2
1,974,611 + Dsui_1877 0.15 -0.1
1,974,633 + -0.4
1,974,660 - -2.5
1,974,792 + -0.1
1,974,800 + Dsui_1877 0.33 -1.7
1,974,929 - Dsui_1877 0.45 +0.5
1,975,152 + Dsui_1877 0.65 -0.9
1,975,262 + Dsui_1877 0.75 +0.3

Or see this region's nucleotide sequence