Strain Fitness in Dechlorosoma suillum PS around Dsui_1669

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1668 and Dsui_1669 are separated by 102 nucleotidesDsui_1669 and Dsui_1670 are separated by 28 nucleotides Dsui_1668: Dsui_1668 - alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase, at 1,752,845 to 1,753,969 _1668 Dsui_1669: Dsui_1669 - trypsin-like serine protease with C-terminal PDZ domain, at 1,754,072 to 1,755,490 _1669 Dsui_1670: Dsui_1670 - cytochrome c peroxidase, at 1,755,519 to 1,756,628 _1670 Position (kb) 1754 1755 1756Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1753.143 kb on - strand, within Dsui_1668at 1753.309 kb on - strandat 1753.762 kb on - strand, within Dsui_1668at 1753.874 kb on - strandat 1754.117 kb on - strandat 1754.232 kb on - strandat 1754.345 kb on - strandat 1754.365 kb on + strandat 1754.391 kb on - strand, within Dsui_1669at 1754.718 kb on + strandat 1754.872 kb on - strand, within Dsui_1669at 1754.969 kb on + strand, within Dsui_1669at 1755.166 kb on + strandat 1755.171 kb on - strand, within Dsui_1669at 1755.184 kb on - strandat 1755.370 kb on + strandat 1755.462 kb on - strandat 1755.515 kb on - strandat 1755.562 kb on - strandat 1755.676 kb on + strandat 1755.684 kb on - strand, within Dsui_1670at 1755.717 kb on + strand, within Dsui_1670at 1755.782 kb on + strandat 1755.835 kb on - strand, within Dsui_1670at 1755.913 kb on - strandat 1756.039 kb on - strand, within Dsui_1670at 1756.057 kb on + strandat 1756.214 kb on - strandat 1756.351 kb on - strand, within Dsui_1670at 1756.351 kb on - strand, within Dsui_1670at 1756.443 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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1,753,143 - Dsui_1668 0.26 -2.3
1,753,309 - -1.8
1,753,762 - Dsui_1668 0.82 -2.5
1,753,874 - -2.9
1,754,117 - +0.4
1,754,232 - +2.4
1,754,345 - -1.7
1,754,365 + +0.9
1,754,391 - Dsui_1669 0.22 +1.6
1,754,718 + -3.0
1,754,872 - Dsui_1669 0.56 -0.2
1,754,969 + Dsui_1669 0.63 -1.3
1,755,166 + +0.2
1,755,171 - Dsui_1669 0.77 -0.2
1,755,184 - +0.5
1,755,370 + -2.2
1,755,462 - +0.3
1,755,515 - +3.3
1,755,562 - +1.7
1,755,676 + -2.0
1,755,684 - Dsui_1670 0.15 -1.7
1,755,717 + Dsui_1670 0.18 -1.2
1,755,782 + -1.7
1,755,835 - Dsui_1670 0.28 -0.3
1,755,913 - -1.9
1,756,039 - Dsui_1670 0.47 -0.2
1,756,057 + -0.9
1,756,214 - -1.9
1,756,351 - Dsui_1670 0.75 +0.4
1,756,351 - Dsui_1670 0.75 +0.1
1,756,443 + -0.7

Or see this region's nucleotide sequence