Strain Fitness in Dechlorosoma suillum PS around Dsui_1578

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1577 and Dsui_1578 are separated by 20 nucleotidesDsui_1578 and Dsui_1579 are separated by 214 nucleotides Dsui_1577: Dsui_1577 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 1,650,574 to 1,652,241 _1577 Dsui_1578: Dsui_1578 - pyruvate dehydrogenase E1 component, homodimeric type, at 1,652,262 to 1,654,934 _1578 Dsui_1579: Dsui_1579 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,655,149 to 1,656,357 _1579 Position (kb) 1652 1653 1654 1655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1651.469 kb on - strand, within Dsui_1577at 1652.161 kb on - strandat 1652.268 kb on + strandat 1652.292 kb on + strandat 1652.302 kb on + strandat 1652.388 kb on - strandat 1652.608 kb on - strand, within Dsui_1578at 1652.886 kb on - strand, within Dsui_1578at 1653.088 kb on + strand, within Dsui_1578at 1653.106 kb on - strand, within Dsui_1578at 1653.279 kb on + strand, within Dsui_1578at 1653.294 kb on + strand, within Dsui_1578at 1653.480 kb on - strand, within Dsui_1578at 1653.646 kb on + strand, within Dsui_1578at 1653.788 kb on - strand, within Dsui_1578at 1653.857 kb on - strand, within Dsui_1578at 1654.017 kb on + strand, within Dsui_1578at 1654.105 kb on + strand, within Dsui_1578at 1654.248 kb on + strand, within Dsui_1578at 1654.389 kb on - strand, within Dsui_1578at 1654.408 kb on + strand, within Dsui_1578at 1654.781 kb on - strandat 1654.837 kb on - strandat 1654.985 kb on - strandat 1655.023 kb on - strandat 1655.073 kb on - strandat 1655.073 kb on - strandat 1655.083 kb on - strandat 1655.091 kb on - strandat 1655.155 kb on - strandat 1655.198 kb on + strandat 1655.203 kb on + strandat 1655.264 kb on - strandat 1655.342 kb on - strand, within Dsui_1579at 1655.400 kb on - strand, within Dsui_1579at 1655.405 kb on + strand, within Dsui_1579at 1655.478 kb on - strand, within Dsui_1579at 1655.523 kb on + strand, within Dsui_1579at 1655.536 kb on - strand, within Dsui_1579at 1655.705 kb on + strandat 1655.722 kb on - strand, within Dsui_1579at 1655.732 kb on - strand, within Dsui_1579at 1655.916 kb on - strand, within Dsui_1579

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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1,651,469 - Dsui_1577 0.54 -1.1
1,652,161 - -0.1
1,652,268 + +0.9
1,652,292 + -1.6
1,652,302 + -0.6
1,652,388 - +0.9
1,652,608 - Dsui_1578 0.13 -2.4
1,652,886 - Dsui_1578 0.23 -0.7
1,653,088 + Dsui_1578 0.31 -1.9
1,653,106 - Dsui_1578 0.32 -1.1
1,653,279 + Dsui_1578 0.38 -1.1
1,653,294 + Dsui_1578 0.39 -1.4
1,653,480 - Dsui_1578 0.46 +0.9
1,653,646 + Dsui_1578 0.52 -0.7
1,653,788 - Dsui_1578 0.57 -0.1
1,653,857 - Dsui_1578 0.60 +0.9
1,654,017 + Dsui_1578 0.66 -1.9
1,654,105 + Dsui_1578 0.69 -2.5
1,654,248 + Dsui_1578 0.74 -2.1
1,654,389 - Dsui_1578 0.80 -1.7
1,654,408 + Dsui_1578 0.80 -2.2
1,654,781 - -1.4
1,654,837 - -0.1
1,654,985 - -4.7
1,655,023 - +0.4
1,655,073 - -1.1
1,655,073 - +0.5
1,655,083 - +0.1
1,655,091 - +1.6
1,655,155 - +0.8
1,655,198 + +0.6
1,655,203 + -2.4
1,655,264 - +1.2
1,655,342 - Dsui_1579 0.16 +0.6
1,655,400 - Dsui_1579 0.21 -0.3
1,655,405 + Dsui_1579 0.21 -0.7
1,655,478 - Dsui_1579 0.27 +0.3
1,655,523 + Dsui_1579 0.31 +0.8
1,655,536 - Dsui_1579 0.32 +0.4
1,655,705 + -1.2
1,655,722 - Dsui_1579 0.47 +0.6
1,655,732 - Dsui_1579 0.48 +0.6
1,655,916 - Dsui_1579 0.63 +0.6

Or see this region's nucleotide sequence