Strain Fitness in Dechlorosoma suillum PS around Dsui_1544

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1543 and Dsui_1544 are separated by 73 nucleotidesDsui_1544 and Dsui_1545 are separated by 249 nucleotidesDsui_1545 and Dsui_1546 are separated by 36 nucleotides Dsui_1543: Dsui_1543 - tRNA/rRNA cytosine-C5-methylase, at 1,603,433 to 1,604,761 _1543 Dsui_1544: Dsui_1544 - Protein of unknown function (DUF3108), at 1,604,835 to 1,605,572 _1544 Dsui_1545: Dsui_1545 - phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent, at 1,605,822 to 1,606,478 _1545 Dsui_1546: Dsui_1546 - hypothetical protein, at 1,606,515 to 1,607,267 _1546 Position (kb) 1604 1605 1606Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1603.892 kb on - strand, within Dsui_1543at 1603.894 kb on + strandat 1603.894 kb on + strandat 1603.923 kb on - strand, within Dsui_1543at 1604.095 kb on + strandat 1604.254 kb on + strandat 1604.280 kb on - strand, within Dsui_1543at 1604.307 kb on + strandat 1604.378 kb on + strand, within Dsui_1543at 1604.380 kb on - strand, within Dsui_1543at 1604.568 kb on - strand, within Dsui_1543at 1605.085 kb on + strandat 1605.113 kb on - strand, within Dsui_1544at 1605.120 kb on - strand, within Dsui_1544at 1605.303 kb on + strandat 1605.397 kb on + strand, within Dsui_1544at 1605.751 kb on - strandat 1605.820 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
remove
1,603,892 - Dsui_1543 0.35 +0.5
1,603,894 + -0.5
1,603,894 + +1.2
1,603,923 - Dsui_1543 0.37 +1.7
1,604,095 + +0.5
1,604,254 + -1.3
1,604,280 - Dsui_1543 0.64 +0.9
1,604,307 + +1.9
1,604,378 + Dsui_1543 0.71 -0.7
1,604,380 - Dsui_1543 0.71 +0.5
1,604,568 - Dsui_1543 0.85 -2.1
1,605,085 + -1.5
1,605,113 - Dsui_1544 0.38 -1.9
1,605,120 - Dsui_1544 0.39 -1.8
1,605,303 + -4.8
1,605,397 + Dsui_1544 0.76 -5.6
1,605,751 - -2.3
1,605,820 + -1.1

Or see this region's nucleotide sequence