Strain Fitness in Dechlorosoma suillum PS around Dsui_1320

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1319 and Dsui_1320 are separated by 24 nucleotidesDsui_1320 and Dsui_1321 are separated by 275 nucleotides Dsui_1319: Dsui_1319 - type II secretory pathway, component PulF, at 1,377,252 to 1,378,496 _1319 Dsui_1320: Dsui_1320 - type IV-A pilus assembly ATPase PilB, at 1,378,521 to 1,380,239 _1320 Dsui_1321: Dsui_1321 - ABC-type uncharacterized transport system, permease component, at 1,380,515 to 1,381,354 _1321 Position (kb) 1378 1379 1380 1381Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1377.569 kb on - strand, within Dsui_1319at 1377.575 kb on - strand, within Dsui_1319at 1377.588 kb on + strand, within Dsui_1319at 1377.588 kb on + strand, within Dsui_1319at 1377.595 kb on + strand, within Dsui_1319at 1377.596 kb on - strand, within Dsui_1319at 1377.596 kb on - strand, within Dsui_1319at 1377.596 kb on - strand, within Dsui_1319at 1377.596 kb on - strand, within Dsui_1319at 1377.603 kb on - strand, within Dsui_1319at 1377.637 kb on + strand, within Dsui_1319at 1377.698 kb on + strand, within Dsui_1319at 1377.703 kb on + strand, within Dsui_1319at 1377.703 kb on + strand, within Dsui_1319at 1377.703 kb on + strand, within Dsui_1319at 1377.706 kb on - strand, within Dsui_1319at 1377.708 kb on + strand, within Dsui_1319at 1377.711 kb on - strand, within Dsui_1319at 1377.711 kb on - strand, within Dsui_1319at 1377.716 kb on - strand, within Dsui_1319at 1377.716 kb on - strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.727 kb on + strand, within Dsui_1319at 1377.735 kb on - strand, within Dsui_1319at 1377.735 kb on - strand, within Dsui_1319at 1377.735 kb on - strand, within Dsui_1319at 1377.735 kb on - strand, within Dsui_1319at 1377.735 kb on - strand, within Dsui_1319at 1377.759 kb on + strand, within Dsui_1319at 1377.767 kb on - strand, within Dsui_1319at 1377.769 kb on + strand, within Dsui_1319at 1377.774 kb on - strand, within Dsui_1319at 1377.777 kb on - strand, within Dsui_1319at 1377.777 kb on - strand, within Dsui_1319at 1377.777 kb on - strand, within Dsui_1319at 1377.803 kb on - strand, within Dsui_1319at 1377.805 kb on + strand, within Dsui_1319at 1377.834 kb on - strand, within Dsui_1319at 1377.834 kb on - strand, within Dsui_1319at 1377.836 kb on + strand, within Dsui_1319at 1377.836 kb on + strand, within Dsui_1319at 1377.844 kb on + strand, within Dsui_1319at 1377.844 kb on - strand, within Dsui_1319at 1377.850 kb on - strand, within Dsui_1319at 1377.850 kb on - strand, within Dsui_1319at 1377.852 kb on - strand, within Dsui_1319at 1377.852 kb on - strand, within Dsui_1319at 1377.859 kb on + strand, within Dsui_1319at 1377.859 kb on - strand, within Dsui_1319at 1377.886 kb on - strand, within Dsui_1319at 1377.911 kb on + strand, within Dsui_1319at 1377.914 kb on + strand, within Dsui_1319at 1377.914 kb on - strand, within Dsui_1319at 1377.921 kb on - strand, within Dsui_1319at 1377.949 kb on + strand, within Dsui_1319at 1377.952 kb on - strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strandat 1377.954 kb on + strandat 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strandat 1377.954 kb on + strandat 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strandat 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.954 kb on + strand, within Dsui_1319at 1377.957 kb on - strand, within Dsui_1319at 1377.957 kb on - strand, within Dsui_1319at 1377.957 kb on - strand, within Dsui_1319at 1377.957 kb on - strand, within Dsui_1319at 1377.957 kb on - strand, within Dsui_1319at 1377.959 kb on + strand, within Dsui_1319at 1377.959 kb on + strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.962 kb on - strand, within Dsui_1319at 1377.964 kb on + strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.967 kb on - strand, within Dsui_1319at 1377.972 kb on - strand, within Dsui_1319at 1378.025 kb on + strand, within Dsui_1319at 1378.036 kb on + strand, within Dsui_1319at 1378.036 kb on + strand, within Dsui_1319at 1378.044 kb on - strand, within Dsui_1319at 1378.113 kb on + strand, within Dsui_1319at 1378.141 kb on + strand, within Dsui_1319at 1378.141 kb on + strand, within Dsui_1319at 1378.160 kb on + strandat 1378.175 kb on + strand, within Dsui_1319at 1378.184 kb on - strand, within Dsui_1319at 1378.193 kb on - strand, within Dsui_1319at 1378.200 kb on + strand, within Dsui_1319at 1378.206 kb on + strand, within Dsui_1319at 1378.215 kb on - strand, within Dsui_1319at 1378.255 kb on - strand, within Dsui_1319at 1378.296 kb on + strand, within Dsui_1319at 1378.333 kb on + strand, within Dsui_1319at 1378.333 kb on - strand, within Dsui_1319at 1378.341 kb on - strand, within Dsui_1319at 1378.351 kb on + strand, within Dsui_1319at 1378.351 kb on + strand, within Dsui_1319at 1378.361 kb on + strand, within Dsui_1319at 1378.369 kb on - strand, within Dsui_1319at 1378.388 kb on - strandat 1378.405 kb on + strandat 1378.410 kb on + strandat 1378.410 kb on + strandat 1378.429 kb on + strandat 1378.439 kb on + strandat 1378.439 kb on + strandat 1378.447 kb on - strandat 1378.447 kb on - strandat 1378.447 kb on - strandat 1378.447 kb on - strandat 1378.447 kb on - strandat 1378.499 kb on - strandat 1378.539 kb on - strandat 1378.581 kb on - strandat 1378.591 kb on - strandat 1378.608 kb on - strandat 1378.608 kb on - strandat 1378.630 kb on + strandat 1378.694 kb on + strand, within Dsui_1320at 1378.706 kb on - strand, within Dsui_1320at 1378.711 kb on - strand, within Dsui_1320at 1378.826 kb on - strand, within Dsui_1320at 1378.875 kb on - strand, within Dsui_1320at 1378.884 kb on + strand, within Dsui_1320at 1378.901 kb on + strand, within Dsui_1320at 1378.916 kb on - strand, within Dsui_1320at 1378.932 kb on - strand, within Dsui_1320at 1378.949 kb on - strand, within Dsui_1320at 1378.968 kb on - strand, within Dsui_1320at 1378.995 kb on + strand, within Dsui_1320at 1379.003 kb on - strand, within Dsui_1320at 1379.036 kb on - strand, within Dsui_1320at 1379.082 kb on + strand, within Dsui_1320at 1379.103 kb on + strand, within Dsui_1320at 1379.111 kb on - strand, within Dsui_1320at 1379.133 kb on - strand, within Dsui_1320at 1379.140 kb on + strand, within Dsui_1320at 1379.144 kb on + strand, within Dsui_1320at 1379.183 kb on + strand, within Dsui_1320at 1379.184 kb on - strand, within Dsui_1320at 1379.226 kb on - strand, within Dsui_1320at 1379.241 kb on - strand, within Dsui_1320at 1379.290 kb on + strand, within Dsui_1320at 1379.295 kb on + strand, within Dsui_1320at 1379.295 kb on + strand, within Dsui_1320at 1379.295 kb on + strand, within Dsui_1320at 1379.310 kb on - strand, within Dsui_1320at 1379.350 kb on + strand, within Dsui_1320at 1379.422 kb on - strand, within Dsui_1320at 1379.681 kb on - strand, within Dsui_1320at 1379.688 kb on - strand, within Dsui_1320at 1379.704 kb on - strand, within Dsui_1320at 1379.719 kb on + strand, within Dsui_1320at 1379.719 kb on + strand, within Dsui_1320at 1379.719 kb on + strand, within Dsui_1320at 1379.719 kb on + strand, within Dsui_1320at 1379.732 kb on - strand, within Dsui_1320at 1379.762 kb on - strand, within Dsui_1320at 1379.762 kb on - strand, within Dsui_1320at 1379.853 kb on + strand, within Dsui_1320at 1379.866 kb on - strand, within Dsui_1320at 1379.978 kb on + strand, within Dsui_1320at 1380.087 kb on + strandat 1380.146 kb on - strandat 1380.160 kb on + strandat 1380.161 kb on - strandat 1380.167 kb on - strandat 1380.178 kb on + strandat 1380.178 kb on - strandat 1380.184 kb on + strandat 1380.184 kb on + strandat 1380.186 kb on - strandat 1380.192 kb on - strandat 1380.210 kb on + strandat 1380.218 kb on - strandat 1380.250 kb on - strandat 1380.257 kb on + strandat 1380.372 kb on - strandat 1380.381 kb on + strandat 1380.389 kb on - strandat 1380.466 kb on - strandat 1380.466 kb on - strandat 1380.466 kb on - strandat 1380.599 kb on + strand, within Dsui_1321at 1380.599 kb on + strand, within Dsui_1321at 1380.774 kb on - strand, within Dsui_1321at 1380.990 kb on - strand, within Dsui_1321at 1381.038 kb on + strand, within Dsui_1321at 1381.116 kb on - strand, within Dsui_1321at 1381.116 kb on - strand, within Dsui_1321at 1381.128 kb on - strand, within Dsui_1321

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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1,377,569 - Dsui_1319 0.25 +0.9
1,377,575 - Dsui_1319 0.26 +0.6
1,377,588 + Dsui_1319 0.27 -0.0
1,377,588 + Dsui_1319 0.27 +0.1
1,377,595 + Dsui_1319 0.28 +0.6
1,377,596 - Dsui_1319 0.28 +0.6
1,377,596 - Dsui_1319 0.28 +1.1
1,377,596 - Dsui_1319 0.28 +2.2
1,377,596 - Dsui_1319 0.28 +1.1
1,377,603 - Dsui_1319 0.28 +0.0
1,377,637 + Dsui_1319 0.31 +0.6
1,377,698 + Dsui_1319 0.36 -1.3
1,377,703 + Dsui_1319 0.36 -0.1
1,377,703 + Dsui_1319 0.36 -2.2
1,377,703 + Dsui_1319 0.36 -4.1
1,377,706 - Dsui_1319 0.36 +1.1
1,377,708 + Dsui_1319 0.37 +0.6
1,377,711 - Dsui_1319 0.37 +2.2
1,377,711 - Dsui_1319 0.37 +0.7
1,377,716 - Dsui_1319 0.37 +0.5
1,377,716 - Dsui_1319 0.37 +2.3
1,377,727 + Dsui_1319 0.38 -2.3
1,377,727 + Dsui_1319 0.38 -0.1
1,377,727 + Dsui_1319 0.38 -0.9
1,377,727 + Dsui_1319 0.38 -1.6
1,377,727 + Dsui_1319 0.38 -1.0
1,377,727 + Dsui_1319 0.38 -1.1
1,377,727 + Dsui_1319 0.38 -1.5
1,377,735 - Dsui_1319 0.39 +0.9
1,377,735 - Dsui_1319 0.39 +0.1
1,377,735 - Dsui_1319 0.39 +1.1
1,377,735 - Dsui_1319 0.39 +1.2
1,377,735 - Dsui_1319 0.39 +0.6
1,377,759 + Dsui_1319 0.41 -2.2
1,377,767 - Dsui_1319 0.41 -0.3
1,377,769 + Dsui_1319 0.42 -0.5
1,377,774 - Dsui_1319 0.42 +0.8
1,377,777 - Dsui_1319 0.42 +0.2
1,377,777 - Dsui_1319 0.42 +0.3
1,377,777 - Dsui_1319 0.42 -0.1
1,377,803 - Dsui_1319 0.44 +1.4
1,377,805 + Dsui_1319 0.44 -3.6
1,377,834 - Dsui_1319 0.47 +1.1
1,377,834 - Dsui_1319 0.47 +0.6
1,377,836 + Dsui_1319 0.47 -2.7
1,377,836 + Dsui_1319 0.47 -4.4
1,377,844 + Dsui_1319 0.48 -1.4
1,377,844 - Dsui_1319 0.48 +1.1
1,377,850 - Dsui_1319 0.48 +0.9
1,377,850 - Dsui_1319 0.48 +1.9
1,377,852 - Dsui_1319 0.48 +1.4
1,377,852 - Dsui_1319 0.48 -0.6
1,377,859 + Dsui_1319 0.49 -0.0
1,377,859 - Dsui_1319 0.49 +0.4
1,377,886 - Dsui_1319 0.51 -0.0
1,377,911 + Dsui_1319 0.53 -1.3
1,377,914 + Dsui_1319 0.53 -1.4
1,377,914 - Dsui_1319 0.53 +1.0
1,377,921 - Dsui_1319 0.54 +1.1
1,377,949 + Dsui_1319 0.56 -3.5
1,377,952 - Dsui_1319 0.56 +0.6
1,377,954 + Dsui_1319 0.56 -1.3
1,377,954 + Dsui_1319 0.56 -4.7
1,377,954 + Dsui_1319 0.56 +0.2
1,377,954 + -0.6
1,377,954 + -0.7
1,377,954 + Dsui_1319 0.56 -0.7
1,377,954 + -2.3
1,377,954 + -1.8
1,377,954 + Dsui_1319 0.56 -3.5
1,377,954 + Dsui_1319 0.56 -0.0
1,377,954 + Dsui_1319 0.56 -0.0
1,377,954 + Dsui_1319 0.56 -0.4
1,377,954 + -0.0
1,377,954 + Dsui_1319 0.56 -2.5
1,377,954 + Dsui_1319 0.56 -2.8
1,377,954 + Dsui_1319 0.56 -0.3
1,377,957 - Dsui_1319 0.57 +1.2
1,377,957 - Dsui_1319 0.57 +0.8
1,377,957 - Dsui_1319 0.57 +1.6
1,377,957 - Dsui_1319 0.57 +0.4
1,377,957 - Dsui_1319 0.57 +0.6
1,377,959 + Dsui_1319 0.57 -0.4
1,377,959 + Dsui_1319 0.57 -2.5
1,377,962 - Dsui_1319 0.57 +2.1
1,377,962 - Dsui_1319 0.57 +0.6
1,377,962 - Dsui_1319 0.57 +0.9
1,377,962 - Dsui_1319 0.57 +1.2
1,377,962 - Dsui_1319 0.57 +1.1
1,377,962 - Dsui_1319 0.57 +0.0
1,377,962 - Dsui_1319 0.57 +0.7
1,377,962 - Dsui_1319 0.57 +0.8
1,377,962 - Dsui_1319 0.57 +0.8
1,377,962 - Dsui_1319 0.57 +0.7
1,377,962 - Dsui_1319 0.57 +0.7
1,377,962 - Dsui_1319 0.57 +0.5
1,377,962 - Dsui_1319 0.57 +1.0
1,377,962 - Dsui_1319 0.57 +1.1
1,377,962 - Dsui_1319 0.57 +0.7
1,377,962 - Dsui_1319 0.57 +0.8
1,377,962 - Dsui_1319 0.57 +0.5
1,377,962 - Dsui_1319 0.57 +1.1
1,377,964 + Dsui_1319 0.57 +0.6
1,377,967 - Dsui_1319 0.57 +1.1
1,377,967 - Dsui_1319 0.57 +1.2
1,377,967 - Dsui_1319 0.57 +1.0
1,377,967 - Dsui_1319 0.57 +1.2
1,377,967 - Dsui_1319 0.57 +0.8
1,377,967 - Dsui_1319 0.57 +0.1
1,377,967 - Dsui_1319 0.57 +0.9
1,377,972 - Dsui_1319 0.58 +0.4
1,378,025 + Dsui_1319 0.62 -3.3
1,378,036 + Dsui_1319 0.63 -0.4
1,378,036 + Dsui_1319 0.63 -3.0
1,378,044 - Dsui_1319 0.64 +0.9
1,378,113 + Dsui_1319 0.69 +0.2
1,378,141 + Dsui_1319 0.71 -0.7
1,378,141 + Dsui_1319 0.71 -1.2
1,378,160 + -0.6
1,378,175 + Dsui_1319 0.74 -2.0
1,378,184 - Dsui_1319 0.75 +0.8
1,378,193 - Dsui_1319 0.76 +0.9
1,378,200 + Dsui_1319 0.76 -1.8
1,378,206 + Dsui_1319 0.77 +0.0
1,378,215 - Dsui_1319 0.77 +1.7
1,378,255 - Dsui_1319 0.81 +0.5
1,378,296 + Dsui_1319 0.84 -0.4
1,378,333 + Dsui_1319 0.87 -0.0
1,378,333 - Dsui_1319 0.87 +0.8
1,378,341 - Dsui_1319 0.87 +1.2
1,378,351 + Dsui_1319 0.88 -0.0
1,378,351 + Dsui_1319 0.88 +0.6
1,378,361 + Dsui_1319 0.89 +0.7
1,378,369 - Dsui_1319 0.90 +0.5
1,378,388 - +0.9
1,378,405 + -0.2
1,378,410 + -1.9
1,378,410 + -1.1
1,378,429 + +0.9
1,378,439 + +1.3
1,378,439 + -1.1
1,378,447 - +1.0
1,378,447 - +0.7
1,378,447 - +1.3
1,378,447 - +1.6
1,378,447 - -0.9
1,378,499 - +0.7
1,378,539 - +0.8
1,378,581 - +0.7
1,378,591 - +0.7
1,378,608 - -0.8
1,378,608 - +0.0
1,378,630 + -0.7
1,378,694 + Dsui_1320 0.10 -0.2
1,378,706 - Dsui_1320 0.11 -0.1
1,378,711 - Dsui_1320 0.11 +1.2
1,378,826 - Dsui_1320 0.18 +0.0
1,378,875 - Dsui_1320 0.21 +0.9
1,378,884 + Dsui_1320 0.21 -0.4
1,378,901 + Dsui_1320 0.22 +0.2
1,378,916 - Dsui_1320 0.23 +0.8
1,378,932 - Dsui_1320 0.24 +0.5
1,378,949 - Dsui_1320 0.25 +0.8
1,378,968 - Dsui_1320 0.26 +1.1
1,378,995 + Dsui_1320 0.28 -2.6
1,379,003 - Dsui_1320 0.28 -0.4
1,379,036 - Dsui_1320 0.30 +0.8
1,379,082 + Dsui_1320 0.33 -2.1
1,379,103 + Dsui_1320 0.34 -0.4
1,379,111 - Dsui_1320 0.34 +0.5
1,379,133 - Dsui_1320 0.36 +1.2
1,379,140 + Dsui_1320 0.36 -0.5
1,379,144 + Dsui_1320 0.36 +0.0
1,379,183 + Dsui_1320 0.39 -0.2
1,379,184 - Dsui_1320 0.39 +0.4
1,379,226 - Dsui_1320 0.41 +0.9
1,379,241 - Dsui_1320 0.42 +0.3
1,379,290 + Dsui_1320 0.45 +0.3
1,379,295 + Dsui_1320 0.45 -1.0
1,379,295 + Dsui_1320 0.45 -0.4
1,379,295 + Dsui_1320 0.45 -0.2
1,379,310 - Dsui_1320 0.46 +0.9
1,379,350 + Dsui_1320 0.48 +0.4
1,379,422 - Dsui_1320 0.52 -0.2
1,379,681 - Dsui_1320 0.67 +0.5
1,379,688 - Dsui_1320 0.68 -0.0
1,379,704 - Dsui_1320 0.69 +0.4
1,379,719 + Dsui_1320 0.70 +0.8
1,379,719 + Dsui_1320 0.70 +2.2
1,379,719 + Dsui_1320 0.70 +0.3
1,379,719 + Dsui_1320 0.70 -0.6
1,379,732 - Dsui_1320 0.70 +0.4
1,379,762 - Dsui_1320 0.72 +0.9
1,379,762 - Dsui_1320 0.72 +0.5
1,379,853 + Dsui_1320 0.77 -0.8
1,379,866 - Dsui_1320 0.78 +0.3
1,379,978 + Dsui_1320 0.85 -0.7
1,380,087 + +0.2
1,380,146 - -0.1
1,380,160 + +0.3
1,380,161 - +0.4
1,380,167 - +0.7
1,380,178 + -0.4
1,380,178 - +1.0
1,380,184 + -0.8
1,380,184 + -0.6
1,380,186 - +0.5
1,380,192 - +0.9
1,380,210 + +2.3
1,380,218 - +0.6
1,380,250 - +0.9
1,380,257 + -0.5
1,380,372 - +0.4
1,380,381 + -0.3
1,380,389 - +0.7
1,380,466 - +0.4
1,380,466 - -0.1
1,380,466 - +0.6
1,380,599 + Dsui_1321 0.10 -2.7
1,380,599 + Dsui_1321 0.10 -3.1
1,380,774 - Dsui_1321 0.31 -4.9
1,380,990 - Dsui_1321 0.57 -4.3
1,381,038 + Dsui_1321 0.62 -2.6
1,381,116 - Dsui_1321 0.72 -1.8
1,381,116 - Dsui_1321 0.72 -3.0
1,381,128 - Dsui_1321 0.73 -5.7

Or see this region's nucleotide sequence