Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1290 and Dsui_1291 are separated by 17 nucleotides Dsui_1291 and Dsui_1292 overlap by 4 nucleotides Dsui_1292 and Dsui_1293 are separated by 25 nucleotides Dsui_1293 and Dsui_1294 are separated by 10 nucleotides
Dsui_1290: Dsui_1290 - hypothetical protein, at 1,353,201 to 1,353,854
_1290
Dsui_1291: Dsui_1291 - hypothetical protein, at 1,353,872 to 1,354,240
_1291
Dsui_1292: Dsui_1292 - MSHA-type pilus biogenesis protein MshL, at 1,354,237 to 1,355,940
_1292
Dsui_1293: Dsui_1293 - type II secretory pathway, component ExeA (predicted ATPase), at 1,355,966 to 1,356,796
_1293
Dsui_1294: Dsui_1294 - hypothetical protein, at 1,356,807 to 1,357,931
_1294
Position (kb)
1354
1355
1356 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1353.240 kb on - strand at 1353.240 kb on - strand at 1353.309 kb on + strand, within Dsui_1290 at 1353.317 kb on - strand, within Dsui_1290 at 1353.352 kb on - strand, within Dsui_1290 at 1353.376 kb on - strand, within Dsui_1290 at 1353.388 kb on + strand, within Dsui_1290 at 1353.401 kb on + strand, within Dsui_1290 at 1353.409 kb on - strand, within Dsui_1290 at 1353.409 kb on - strand, within Dsui_1290 at 1353.409 kb on - strand, within Dsui_1290 at 1353.492 kb on - strand, within Dsui_1290 at 1353.535 kb on - strand, within Dsui_1290 at 1353.545 kb on - strand, within Dsui_1290 at 1353.684 kb on + strand, within Dsui_1290 at 1353.726 kb on + strand, within Dsui_1290 at 1353.776 kb on - strand, within Dsui_1290 at 1353.820 kb on + strand at 1353.820 kb on - strand at 1353.830 kb on + strand at 1353.838 kb on - strand at 1353.841 kb on + strand at 1353.874 kb on + strand at 1353.874 kb on + strand at 1353.880 kb on - strand at 1353.882 kb on - strand at 1353.906 kb on - strand at 1353.916 kb on + strand, within Dsui_1291 at 1353.928 kb on + strand, within Dsui_1291 at 1353.928 kb on + strand, within Dsui_1291 at 1353.936 kb on - strand, within Dsui_1291 at 1353.991 kb on + strand, within Dsui_1291 at 1354.069 kb on - strand, within Dsui_1291 at 1354.105 kb on + strand, within Dsui_1291 at 1354.132 kb on - strand, within Dsui_1291 at 1354.134 kb on + strand, within Dsui_1291 at 1354.134 kb on + strand, within Dsui_1291 at 1354.134 kb on + strand, within Dsui_1291 at 1354.142 kb on - strand, within Dsui_1291 at 1354.151 kb on + strand, within Dsui_1291 at 1354.308 kb on - strand at 1354.316 kb on + strand at 1354.324 kb on - strand at 1354.326 kb on + strand at 1354.346 kb on - strand at 1354.472 kb on - strand, within Dsui_1292 at 1354.508 kb on - strand, within Dsui_1292 at 1354.590 kb on + strand, within Dsui_1292 at 1354.608 kb on + strand, within Dsui_1292 at 1354.652 kb on - strand, within Dsui_1292 at 1354.714 kb on + strand, within Dsui_1292 at 1354.746 kb on + strand, within Dsui_1292 at 1354.784 kb on + strand, within Dsui_1292 at 1354.803 kb on + strand, within Dsui_1292 at 1354.803 kb on + strand, within Dsui_1292 at 1354.871 kb on - strand, within Dsui_1292 at 1354.875 kb on + strand, within Dsui_1292 at 1354.883 kb on - strand, within Dsui_1292 at 1354.909 kb on + strand, within Dsui_1292 at 1354.921 kb on + strand, within Dsui_1292 at 1354.947 kb on + strand, within Dsui_1292 at 1355.057 kb on - strand, within Dsui_1292 at 1355.130 kb on - strand, within Dsui_1292 at 1355.130 kb on - strand, within Dsui_1292 at 1355.342 kb on - strand, within Dsui_1292 at 1355.347 kb on + strand, within Dsui_1292 at 1355.410 kb on + strand, within Dsui_1292 at 1355.430 kb on + strand, within Dsui_1292 at 1355.438 kb on - strand, within Dsui_1292 at 1355.471 kb on - strand, within Dsui_1292 at 1355.477 kb on + strand, within Dsui_1292 at 1355.504 kb on + strand, within Dsui_1292 at 1355.512 kb on - strand, within Dsui_1292 at 1355.524 kb on + strand, within Dsui_1292 at 1355.536 kb on - strand, within Dsui_1292 at 1355.747 kb on - strand, within Dsui_1292 at 1355.767 kb on + strand, within Dsui_1292 at 1355.781 kb on - strand at 1355.814 kb on - strand at 1355.824 kb on - strand at 1355.826 kb on + strand at 1355.854 kb on - strand at 1355.895 kb on + strand at 1355.931 kb on + strand at 1355.974 kb on - strand at 1355.989 kb on + strand at 1356.006 kb on + strand at 1356.029 kb on - strand at 1356.034 kb on + strand at 1356.089 kb on + strand, within Dsui_1293 at 1356.212 kb on - strand, within Dsui_1293 at 1356.229 kb on + strand, within Dsui_1293 at 1356.286 kb on + strand, within Dsui_1293 at 1356.366 kb on - strand, within Dsui_1293 at 1356.456 kb on + strand, within Dsui_1293 at 1356.584 kb on - strand, within Dsui_1293 at 1356.667 kb on + strand, within Dsui_1293 at 1356.688 kb on - strand, within Dsui_1293 at 1356.737 kb on - strand at 1356.739 kb on + strand at 1356.747 kb on - strand at 1356.757 kb on + strand at 1356.828 kb on + strand at 1356.835 kb on + strand at 1356.835 kb on + strand at 1356.845 kb on + strand at 1356.845 kb on + strand at 1356.851 kb on + strand at 1356.892 kb on + strand at 1356.893 kb on - strand at 1356.928 kb on + strand, within Dsui_1294
Per-strain Table
Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate remove 1,353,240 - -1.8 1,353,240 - -2.9 1,353,309 + Dsui_1290 0.17 -1.0 1,353,317 - Dsui_1290 0.18 -3.3 1,353,352 - Dsui_1290 0.23 -3.2 1,353,376 - Dsui_1290 0.27 -2.0 1,353,388 + Dsui_1290 0.29 -1.3 1,353,401 + Dsui_1290 0.31 -1.4 1,353,409 - Dsui_1290 0.32 -1.0 1,353,409 - Dsui_1290 0.32 -3.8 1,353,409 - Dsui_1290 0.32 -1.6 1,353,492 - Dsui_1290 0.44 -1.5 1,353,535 - Dsui_1290 0.51 -2.6 1,353,545 - Dsui_1290 0.53 -3.1 1,353,684 + Dsui_1290 0.74 -1.6 1,353,726 + Dsui_1290 0.80 +0.6 1,353,776 - Dsui_1290 0.88 -2.7 1,353,820 + -2.2 1,353,820 - -2.4 1,353,830 + +0.9 1,353,838 - -1.6 1,353,841 + -1.6 1,353,874 + -0.6 1,353,874 + -3.0 1,353,880 - -3.0 1,353,882 - -3.5 1,353,906 - -4.1 1,353,916 + Dsui_1291 0.12 -0.5 1,353,928 + Dsui_1291 0.15 -1.7 1,353,928 + Dsui_1291 0.15 -7.2 1,353,936 - Dsui_1291 0.17 -0.7 1,353,991 + Dsui_1291 0.32 -2.5 1,354,069 - Dsui_1291 0.53 -2.7 1,354,105 + Dsui_1291 0.63 -0.8 1,354,132 - Dsui_1291 0.70 -2.2 1,354,134 + Dsui_1291 0.71 -2.8 1,354,134 + Dsui_1291 0.71 -1.1 1,354,134 + Dsui_1291 0.71 -0.8 1,354,142 - Dsui_1291 0.73 +0.8 1,354,151 + Dsui_1291 0.76 -0.4 1,354,308 - +1.6 1,354,316 + -0.3 1,354,324 - -2.2 1,354,326 + -2.5 1,354,346 - -1.5 1,354,472 - Dsui_1292 0.14 -3.4 1,354,508 - Dsui_1292 0.16 -2.8 1,354,590 + Dsui_1292 0.21 -1.5 1,354,608 + Dsui_1292 0.22 -0.5 1,354,652 - Dsui_1292 0.24 -2.6 1,354,714 + Dsui_1292 0.28 -2.0 1,354,746 + Dsui_1292 0.30 -0.7 1,354,784 + Dsui_1292 0.32 -1.3 1,354,803 + Dsui_1292 0.33 -1.9 1,354,803 + Dsui_1292 0.33 +0.9 1,354,871 - Dsui_1292 0.37 -3.6 1,354,875 + Dsui_1292 0.37 -1.5 1,354,883 - Dsui_1292 0.38 -2.2 1,354,909 + Dsui_1292 0.39 -1.2 1,354,921 + Dsui_1292 0.40 -1.3 1,354,947 + Dsui_1292 0.42 -0.7 1,355,057 - Dsui_1292 0.48 -2.5 1,355,130 - Dsui_1292 0.52 -2.3 1,355,130 - Dsui_1292 0.52 -1.7 1,355,342 - Dsui_1292 0.65 -3.2 1,355,347 + Dsui_1292 0.65 -1.0 1,355,410 + Dsui_1292 0.69 -2.1 1,355,430 + Dsui_1292 0.70 -1.9 1,355,438 - Dsui_1292 0.70 -3.8 1,355,471 - Dsui_1292 0.72 -2.4 1,355,477 + Dsui_1292 0.73 -0.0 1,355,504 + Dsui_1292 0.74 -0.4 1,355,512 - Dsui_1292 0.75 -1.5 1,355,524 + Dsui_1292 0.76 -1.7 1,355,536 - Dsui_1292 0.76 -1.7 1,355,747 - Dsui_1292 0.89 -2.5 1,355,767 + Dsui_1292 0.90 -0.1 1,355,781 - -1.8 1,355,814 - -1.7 1,355,824 - -3.2 1,355,826 + -2.0 1,355,854 - -1.4 1,355,895 + -0.5 1,355,931 + +0.9 1,355,974 - -0.5 1,355,989 + -0.4 1,356,006 + -0.1 1,356,029 - -0.6 1,356,034 + +0.1 1,356,089 + Dsui_1293 0.15 +0.0 1,356,212 - Dsui_1293 0.30 -0.7 1,356,229 + Dsui_1293 0.32 +0.7 1,356,286 + Dsui_1293 0.39 -2.1 1,356,366 - Dsui_1293 0.48 -2.3 1,356,456 + Dsui_1293 0.59 -0.4 1,356,584 - Dsui_1293 0.74 -0.7 1,356,667 + Dsui_1293 0.84 +0.1 1,356,688 - Dsui_1293 0.87 -0.4 1,356,737 - -2.1 1,356,739 + -0.5 1,356,747 - -1.6 1,356,757 + -0.4 1,356,828 + +0.3 1,356,835 + -0.5 1,356,835 + -1.0 1,356,845 + -0.1 1,356,845 + +0.4 1,356,851 + +0.1 1,356,892 + -0.5 1,356,893 - -1.0 1,356,928 + Dsui_1294 0.11 -1.4
Or see this region's nucleotide sequence