Strain Fitness in Dechlorosoma suillum PS around Dsui_1292

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1290 and Dsui_1291 are separated by 17 nucleotidesDsui_1291 and Dsui_1292 overlap by 4 nucleotidesDsui_1292 and Dsui_1293 are separated by 25 nucleotidesDsui_1293 and Dsui_1294 are separated by 10 nucleotides Dsui_1290: Dsui_1290 - hypothetical protein, at 1,353,201 to 1,353,854 _1290 Dsui_1291: Dsui_1291 - hypothetical protein, at 1,353,872 to 1,354,240 _1291 Dsui_1292: Dsui_1292 - MSHA-type pilus biogenesis protein MshL, at 1,354,237 to 1,355,940 _1292 Dsui_1293: Dsui_1293 - type II secretory pathway, component ExeA (predicted ATPase), at 1,355,966 to 1,356,796 _1293 Dsui_1294: Dsui_1294 - hypothetical protein, at 1,356,807 to 1,357,931 _1294 Position (kb) 1354 1355 1356Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1353.240 kb on - strandat 1353.240 kb on - strandat 1353.309 kb on + strand, within Dsui_1290at 1353.317 kb on - strand, within Dsui_1290at 1353.352 kb on - strand, within Dsui_1290at 1353.376 kb on - strand, within Dsui_1290at 1353.388 kb on + strand, within Dsui_1290at 1353.401 kb on + strand, within Dsui_1290at 1353.409 kb on - strand, within Dsui_1290at 1353.409 kb on - strand, within Dsui_1290at 1353.409 kb on - strand, within Dsui_1290at 1353.492 kb on - strand, within Dsui_1290at 1353.535 kb on - strand, within Dsui_1290at 1353.545 kb on - strand, within Dsui_1290at 1353.684 kb on + strand, within Dsui_1290at 1353.726 kb on + strand, within Dsui_1290at 1353.776 kb on - strand, within Dsui_1290at 1353.820 kb on + strandat 1353.820 kb on - strandat 1353.830 kb on + strandat 1353.838 kb on - strandat 1353.841 kb on + strandat 1353.874 kb on + strandat 1353.874 kb on + strandat 1353.880 kb on - strandat 1353.882 kb on - strandat 1353.906 kb on - strandat 1353.916 kb on + strand, within Dsui_1291at 1353.928 kb on + strand, within Dsui_1291at 1353.928 kb on + strand, within Dsui_1291at 1353.936 kb on - strand, within Dsui_1291at 1353.991 kb on + strand, within Dsui_1291at 1354.069 kb on - strand, within Dsui_1291at 1354.105 kb on + strand, within Dsui_1291at 1354.132 kb on - strand, within Dsui_1291at 1354.134 kb on + strand, within Dsui_1291at 1354.134 kb on + strand, within Dsui_1291at 1354.134 kb on + strand, within Dsui_1291at 1354.142 kb on - strand, within Dsui_1291at 1354.151 kb on + strand, within Dsui_1291at 1354.308 kb on - strandat 1354.316 kb on + strandat 1354.324 kb on - strandat 1354.326 kb on + strandat 1354.346 kb on - strandat 1354.472 kb on - strand, within Dsui_1292at 1354.508 kb on - strand, within Dsui_1292at 1354.590 kb on + strand, within Dsui_1292at 1354.608 kb on + strand, within Dsui_1292at 1354.652 kb on - strand, within Dsui_1292at 1354.714 kb on + strand, within Dsui_1292at 1354.746 kb on + strand, within Dsui_1292at 1354.784 kb on + strand, within Dsui_1292at 1354.803 kb on + strand, within Dsui_1292at 1354.803 kb on + strand, within Dsui_1292at 1354.871 kb on - strand, within Dsui_1292at 1354.875 kb on + strand, within Dsui_1292at 1354.883 kb on - strand, within Dsui_1292at 1354.909 kb on + strand, within Dsui_1292at 1354.921 kb on + strand, within Dsui_1292at 1354.947 kb on + strand, within Dsui_1292at 1355.057 kb on - strand, within Dsui_1292at 1355.130 kb on - strand, within Dsui_1292at 1355.130 kb on - strand, within Dsui_1292at 1355.342 kb on - strand, within Dsui_1292at 1355.347 kb on + strand, within Dsui_1292at 1355.410 kb on + strand, within Dsui_1292at 1355.430 kb on + strand, within Dsui_1292at 1355.438 kb on - strand, within Dsui_1292at 1355.471 kb on - strand, within Dsui_1292at 1355.477 kb on + strand, within Dsui_1292at 1355.504 kb on + strand, within Dsui_1292at 1355.512 kb on - strand, within Dsui_1292at 1355.524 kb on + strand, within Dsui_1292at 1355.536 kb on - strand, within Dsui_1292at 1355.747 kb on - strand, within Dsui_1292at 1355.767 kb on + strand, within Dsui_1292at 1355.781 kb on - strandat 1355.814 kb on - strandat 1355.824 kb on - strandat 1355.826 kb on + strandat 1355.854 kb on - strandat 1355.895 kb on + strandat 1355.931 kb on + strandat 1355.974 kb on - strandat 1355.989 kb on + strandat 1356.006 kb on + strandat 1356.029 kb on - strandat 1356.034 kb on + strandat 1356.089 kb on + strand, within Dsui_1293at 1356.212 kb on - strand, within Dsui_1293at 1356.229 kb on + strand, within Dsui_1293at 1356.286 kb on + strand, within Dsui_1293at 1356.366 kb on - strand, within Dsui_1293at 1356.456 kb on + strand, within Dsui_1293at 1356.584 kb on - strand, within Dsui_1293at 1356.667 kb on + strand, within Dsui_1293at 1356.688 kb on - strand, within Dsui_1293at 1356.737 kb on - strandat 1356.739 kb on + strandat 1356.747 kb on - strandat 1356.757 kb on + strandat 1356.828 kb on + strandat 1356.835 kb on + strandat 1356.835 kb on + strandat 1356.845 kb on + strandat 1356.845 kb on + strandat 1356.851 kb on + strandat 1356.892 kb on + strandat 1356.893 kb on - strandat 1356.928 kb on + strand, within Dsui_1294

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
remove
1,353,240 - -1.8
1,353,240 - -2.9
1,353,309 + Dsui_1290 0.17 -1.0
1,353,317 - Dsui_1290 0.18 -3.3
1,353,352 - Dsui_1290 0.23 -3.2
1,353,376 - Dsui_1290 0.27 -2.0
1,353,388 + Dsui_1290 0.29 -1.3
1,353,401 + Dsui_1290 0.31 -1.4
1,353,409 - Dsui_1290 0.32 -1.0
1,353,409 - Dsui_1290 0.32 -3.8
1,353,409 - Dsui_1290 0.32 -1.6
1,353,492 - Dsui_1290 0.44 -1.5
1,353,535 - Dsui_1290 0.51 -2.6
1,353,545 - Dsui_1290 0.53 -3.1
1,353,684 + Dsui_1290 0.74 -1.6
1,353,726 + Dsui_1290 0.80 +0.6
1,353,776 - Dsui_1290 0.88 -2.7
1,353,820 + -2.2
1,353,820 - -2.4
1,353,830 + +0.9
1,353,838 - -1.6
1,353,841 + -1.6
1,353,874 + -0.6
1,353,874 + -3.0
1,353,880 - -3.0
1,353,882 - -3.5
1,353,906 - -4.1
1,353,916 + Dsui_1291 0.12 -0.5
1,353,928 + Dsui_1291 0.15 -1.7
1,353,928 + Dsui_1291 0.15 -7.2
1,353,936 - Dsui_1291 0.17 -0.7
1,353,991 + Dsui_1291 0.32 -2.5
1,354,069 - Dsui_1291 0.53 -2.7
1,354,105 + Dsui_1291 0.63 -0.8
1,354,132 - Dsui_1291 0.70 -2.2
1,354,134 + Dsui_1291 0.71 -2.8
1,354,134 + Dsui_1291 0.71 -1.1
1,354,134 + Dsui_1291 0.71 -0.8
1,354,142 - Dsui_1291 0.73 +0.8
1,354,151 + Dsui_1291 0.76 -0.4
1,354,308 - +1.6
1,354,316 + -0.3
1,354,324 - -2.2
1,354,326 + -2.5
1,354,346 - -1.5
1,354,472 - Dsui_1292 0.14 -3.4
1,354,508 - Dsui_1292 0.16 -2.8
1,354,590 + Dsui_1292 0.21 -1.5
1,354,608 + Dsui_1292 0.22 -0.5
1,354,652 - Dsui_1292 0.24 -2.6
1,354,714 + Dsui_1292 0.28 -2.0
1,354,746 + Dsui_1292 0.30 -0.7
1,354,784 + Dsui_1292 0.32 -1.3
1,354,803 + Dsui_1292 0.33 -1.9
1,354,803 + Dsui_1292 0.33 +0.9
1,354,871 - Dsui_1292 0.37 -3.6
1,354,875 + Dsui_1292 0.37 -1.5
1,354,883 - Dsui_1292 0.38 -2.2
1,354,909 + Dsui_1292 0.39 -1.2
1,354,921 + Dsui_1292 0.40 -1.3
1,354,947 + Dsui_1292 0.42 -0.7
1,355,057 - Dsui_1292 0.48 -2.5
1,355,130 - Dsui_1292 0.52 -2.3
1,355,130 - Dsui_1292 0.52 -1.7
1,355,342 - Dsui_1292 0.65 -3.2
1,355,347 + Dsui_1292 0.65 -1.0
1,355,410 + Dsui_1292 0.69 -2.1
1,355,430 + Dsui_1292 0.70 -1.9
1,355,438 - Dsui_1292 0.70 -3.8
1,355,471 - Dsui_1292 0.72 -2.4
1,355,477 + Dsui_1292 0.73 -0.0
1,355,504 + Dsui_1292 0.74 -0.4
1,355,512 - Dsui_1292 0.75 -1.5
1,355,524 + Dsui_1292 0.76 -1.7
1,355,536 - Dsui_1292 0.76 -1.7
1,355,747 - Dsui_1292 0.89 -2.5
1,355,767 + Dsui_1292 0.90 -0.1
1,355,781 - -1.8
1,355,814 - -1.7
1,355,824 - -3.2
1,355,826 + -2.0
1,355,854 - -1.4
1,355,895 + -0.5
1,355,931 + +0.9
1,355,974 - -0.5
1,355,989 + -0.4
1,356,006 + -0.1
1,356,029 - -0.6
1,356,034 + +0.1
1,356,089 + Dsui_1293 0.15 +0.0
1,356,212 - Dsui_1293 0.30 -0.7
1,356,229 + Dsui_1293 0.32 +0.7
1,356,286 + Dsui_1293 0.39 -2.1
1,356,366 - Dsui_1293 0.48 -2.3
1,356,456 + Dsui_1293 0.59 -0.4
1,356,584 - Dsui_1293 0.74 -0.7
1,356,667 + Dsui_1293 0.84 +0.1
1,356,688 - Dsui_1293 0.87 -0.4
1,356,737 - -2.1
1,356,739 + -0.5
1,356,747 - -1.6
1,356,757 + -0.4
1,356,828 + +0.3
1,356,835 + -0.5
1,356,835 + -1.0
1,356,845 + -0.1
1,356,845 + +0.4
1,356,851 + +0.1
1,356,892 + -0.5
1,356,893 - -1.0
1,356,928 + Dsui_1294 0.11 -1.4

Or see this region's nucleotide sequence