Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1277 and Dsui_1278 are separated by 12 nucleotides Dsui_1278 and Dsui_1279 are separated by 88 nucleotides Dsui_1279 and Dsui_1280 are separated by 2 nucleotides
Dsui_1277: Dsui_1277 - glycerol-3-phosphate dehydrogenase, at 1,338,290 to 1,339,285
_1277
Dsui_1278: Dsui_1278 - putative rRNA methylase SpoU family, at 1,339,298 to 1,339,762
_1278
Dsui_1279: Dsui_1279 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,339,851 to 1,341,557
_1279
Dsui_1280: Dsui_1280 - type II secretory pathway, component PulF, at 1,341,560 to 1,342,789
_1280
Position (kb)
1339
1340
1341
1342 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1339.264 kb on + strand at 1339.333 kb on + strand at 1339.510 kb on - strand, within Dsui_1278 at 1339.510 kb on - strand, within Dsui_1278 at 1339.594 kb on - strand, within Dsui_1278 at 1339.655 kb on + strand, within Dsui_1278 at 1339.662 kb on + strand, within Dsui_1278 at 1339.689 kb on + strand, within Dsui_1278 at 1339.689 kb on + strand, within Dsui_1278 at 1339.695 kb on + strand, within Dsui_1278 at 1339.702 kb on + strand, within Dsui_1278 at 1339.729 kb on - strand at 1339.731 kb on + strand at 1339.742 kb on + strand at 1339.749 kb on - strand at 1339.899 kb on + strand at 1339.902 kb on + strand at 1339.902 kb on - strand at 1339.912 kb on + strand at 1339.915 kb on - strand at 1339.919 kb on + strand at 1339.919 kb on + strand at 1339.919 kb on + strand at 1339.919 kb on + strand at 1339.927 kb on - strand at 1339.936 kb on - strand at 1339.994 kb on - strand at 1340.099 kb on + strand, within Dsui_1279 at 1340.173 kb on + strand, within Dsui_1279 at 1340.249 kb on - strand, within Dsui_1279 at 1340.366 kb on - strand, within Dsui_1279 at 1340.413 kb on - strand, within Dsui_1279 at 1340.443 kb on + strand, within Dsui_1279 at 1340.514 kb on + strand, within Dsui_1279 at 1340.519 kb on + strand, within Dsui_1279 at 1340.555 kb on - strand, within Dsui_1279 at 1340.577 kb on + strand, within Dsui_1279 at 1340.617 kb on - strand, within Dsui_1279 at 1340.631 kb on - strand, within Dsui_1279 at 1340.730 kb on + strand, within Dsui_1279 at 1340.760 kb on + strand, within Dsui_1279 at 1340.768 kb on - strand, within Dsui_1279 at 1340.813 kb on - strand, within Dsui_1279 at 1340.845 kb on + strand, within Dsui_1279 at 1340.853 kb on - strand, within Dsui_1279 at 1340.860 kb on + strand, within Dsui_1279 at 1340.896 kb on + strand, within Dsui_1279 at 1340.928 kb on + strand, within Dsui_1279 at 1341.043 kb on - strand, within Dsui_1279 at 1341.148 kb on - strand, within Dsui_1279 at 1341.193 kb on - strand, within Dsui_1279 at 1341.279 kb on - strand, within Dsui_1279 at 1341.298 kb on - strand, within Dsui_1279 at 1341.384 kb on - strand, within Dsui_1279 at 1341.473 kb on + strand at 1341.489 kb on + strand at 1341.492 kb on - strand at 1341.506 kb on - strand at 1341.506 kb on - strand at 1341.581 kb on - strand at 1341.604 kb on + strand at 1341.787 kb on + strand, within Dsui_1280 at 1341.795 kb on - strand, within Dsui_1280 at 1341.799 kb on + strand, within Dsui_1280 at 1341.804 kb on + strand, within Dsui_1280 at 1341.807 kb on - strand, within Dsui_1280 at 1341.807 kb on - strand, within Dsui_1280 at 1341.979 kb on + strand, within Dsui_1280 at 1342.056 kb on - strand, within Dsui_1280 at 1342.060 kb on - strand, within Dsui_1280 at 1342.071 kb on - strand, within Dsui_1280 at 1342.086 kb on - strand, within Dsui_1280 at 1342.089 kb on + strand, within Dsui_1280 at 1342.160 kb on + strand, within Dsui_1280 at 1342.168 kb on - strand, within Dsui_1280 at 1342.170 kb on - strand, within Dsui_1280 at 1342.170 kb on - strand, within Dsui_1280 at 1342.184 kb on - strand, within Dsui_1280 at 1342.235 kb on + strand, within Dsui_1280 at 1342.247 kb on - strand, within Dsui_1280 at 1342.309 kb on - strand, within Dsui_1280 at 1342.309 kb on - strand at 1342.377 kb on - strand, within Dsui_1280 at 1342.411 kb on + strand, within Dsui_1280 at 1342.416 kb on + strand, within Dsui_1280 at 1342.427 kb on + strand, within Dsui_1280 at 1342.435 kb on + strand, within Dsui_1280 at 1342.435 kb on + strand, within Dsui_1280 at 1342.450 kb on + strand, within Dsui_1280 at 1342.450 kb on + strand, within Dsui_1280 at 1342.450 kb on + strand, within Dsui_1280 at 1342.458 kb on - strand, within Dsui_1280 at 1342.468 kb on - strand, within Dsui_1280 at 1342.505 kb on + strand, within Dsui_1280 at 1342.505 kb on + strand, within Dsui_1280 at 1342.513 kb on - strand, within Dsui_1280 at 1342.513 kb on - strand, within Dsui_1280 at 1342.513 kb on - strand, within Dsui_1280 at 1342.514 kb on - strand, within Dsui_1280 at 1342.514 kb on - strand, within Dsui_1280 at 1342.516 kb on + strand, within Dsui_1280 at 1342.521 kb on + strand, within Dsui_1280
Per-strain Table
Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate remove 1,339,264 + -0.4 1,339,333 + +1.4 1,339,510 - Dsui_1278 0.46 +1.8 1,339,510 - Dsui_1278 0.46 +1.8 1,339,594 - Dsui_1278 0.64 -0.3 1,339,655 + Dsui_1278 0.77 -0.0 1,339,662 + Dsui_1278 0.78 -0.0 1,339,689 + Dsui_1278 0.84 +0.2 1,339,689 + Dsui_1278 0.84 -0.2 1,339,695 + Dsui_1278 0.85 -1.0 1,339,702 + Dsui_1278 0.87 -0.4 1,339,729 - -0.2 1,339,731 + +1.0 1,339,742 + +0.3 1,339,749 - -0.2 1,339,899 + -1.4 1,339,902 + -1.4 1,339,902 - -4.3 1,339,912 + -1.0 1,339,915 - -1.3 1,339,919 + -2.4 1,339,919 + -1.0 1,339,919 + -0.5 1,339,919 + -1.4 1,339,927 - -0.6 1,339,936 - -2.1 1,339,994 - -2.0 1,340,099 + Dsui_1279 0.15 -1.5 1,340,173 + Dsui_1279 0.19 +0.2 1,340,249 - Dsui_1279 0.23 -4.0 1,340,366 - Dsui_1279 0.30 -2.4 1,340,413 - Dsui_1279 0.33 -0.1 1,340,443 + Dsui_1279 0.35 -1.2 1,340,514 + Dsui_1279 0.39 -1.3 1,340,519 + Dsui_1279 0.39 -0.9 1,340,555 - Dsui_1279 0.41 -1.5 1,340,577 + Dsui_1279 0.43 -3.0 1,340,617 - Dsui_1279 0.45 -2.1 1,340,631 - Dsui_1279 0.46 -1.8 1,340,730 + Dsui_1279 0.51 -1.5 1,340,760 + Dsui_1279 0.53 -2.1 1,340,768 - Dsui_1279 0.54 -2.0 1,340,813 - Dsui_1279 0.56 -2.7 1,340,845 + Dsui_1279 0.58 -1.7 1,340,853 - Dsui_1279 0.59 -1.3 1,340,860 + Dsui_1279 0.59 -2.2 1,340,896 + Dsui_1279 0.61 -1.6 1,340,928 + Dsui_1279 0.63 -1.5 1,341,043 - Dsui_1279 0.70 -2.0 1,341,148 - Dsui_1279 0.76 -1.1 1,341,193 - Dsui_1279 0.79 -1.7 1,341,279 - Dsui_1279 0.84 -1.8 1,341,298 - Dsui_1279 0.85 -1.6 1,341,384 - Dsui_1279 0.90 -4.2 1,341,473 + -2.5 1,341,489 + -1.5 1,341,492 - -2.2 1,341,506 - -3.9 1,341,506 - -3.0 1,341,581 - -2.0 1,341,604 + -1.3 1,341,787 + Dsui_1280 0.18 -1.2 1,341,795 - Dsui_1280 0.19 -3.1 1,341,799 + Dsui_1280 0.19 -1.2 1,341,804 + Dsui_1280 0.20 -1.9 1,341,807 - Dsui_1280 0.20 -1.0 1,341,807 - Dsui_1280 0.20 -3.5 1,341,979 + Dsui_1280 0.34 -1.8 1,342,056 - Dsui_1280 0.40 -1.1 1,342,060 - Dsui_1280 0.41 -2.0 1,342,071 - Dsui_1280 0.42 +0.9 1,342,086 - Dsui_1280 0.43 -2.0 1,342,089 + Dsui_1280 0.43 -1.8 1,342,160 + Dsui_1280 0.49 -1.9 1,342,168 - Dsui_1280 0.49 -0.8 1,342,170 - Dsui_1280 0.50 -1.1 1,342,170 - Dsui_1280 0.50 -1.5 1,342,184 - Dsui_1280 0.51 -0.4 1,342,235 + Dsui_1280 0.55 -1.3 1,342,247 - Dsui_1280 0.56 -3.1 1,342,309 - Dsui_1280 0.61 -2.3 1,342,309 - -2.9 1,342,377 - Dsui_1280 0.66 -3.1 1,342,411 + Dsui_1280 0.69 -2.3 1,342,416 + Dsui_1280 0.70 -2.1 1,342,427 + Dsui_1280 0.70 -3.5 1,342,435 + Dsui_1280 0.71 -1.0 1,342,435 + Dsui_1280 0.71 -2.1 1,342,450 + Dsui_1280 0.72 -1.5 1,342,450 + Dsui_1280 0.72 -1.1 1,342,450 + Dsui_1280 0.72 -1.4 1,342,458 - Dsui_1280 0.73 -3.3 1,342,468 - Dsui_1280 0.74 -1.6 1,342,505 + Dsui_1280 0.77 -1.1 1,342,505 + Dsui_1280 0.77 -0.5 1,342,513 - Dsui_1280 0.77 -3.6 1,342,513 - Dsui_1280 0.77 -2.9 1,342,513 - Dsui_1280 0.77 -3.3 1,342,514 - Dsui_1280 0.78 -1.3 1,342,514 - Dsui_1280 0.78 -0.5 1,342,516 + Dsui_1280 0.78 -1.4 1,342,521 + Dsui_1280 0.78 +2.7
Or see this region's nucleotide sequence