Strain Fitness in Dechlorosoma suillum PS around Dsui_0383

Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0381 and Dsui_0382 are separated by 1 nucleotidesDsui_0382 and Dsui_0383 are separated by 123 nucleotidesDsui_0383 and Dsui_0384 are separated by 99 nucleotides Dsui_0381: Dsui_0381 - signal transduction histidine kinase, at 380,673 to 382,576 _0381 Dsui_0382: Dsui_0382 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 382,578 to 383,228 _0382 Dsui_0383: Dsui_0383 - hypothetical protein, at 383,352 to 383,864 _0383 Dsui_0384: Dsui_0384 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 383,964 to 385,313 _0384 Position (kb) 383 384Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 382.417 kb on - strandat 382.485 kb on + strandat 382.493 kb on - strandat 382.584 kb on - strandat 382.607 kb on - strandat 382.613 kb on + strandat 382.642 kb on - strandat 382.720 kb on - strand, within Dsui_0382at 382.725 kb on - strand, within Dsui_0382at 382.745 kb on + strand, within Dsui_0382at 382.906 kb on + strand, within Dsui_0382at 382.914 kb on - strand, within Dsui_0382at 382.958 kb on + strand, within Dsui_0382at 382.965 kb on + strand, within Dsui_0382at 383.032 kb on - strand, within Dsui_0382at 383.032 kb on - strand, within Dsui_0382at 383.139 kb on - strand, within Dsui_0382at 383.175 kb on + strandat 383.175 kb on + strandat 383.183 kb on - strandat 383.183 kb on - strandat 383.238 kb on - strandat 383.271 kb on - strandat 383.281 kb on - strandat 383.321 kb on - strandat 383.350 kb on + strandat 383.354 kb on - strandat 383.358 kb on - strandat 383.413 kb on - strandat 383.432 kb on - strand, within Dsui_0383at 383.440 kb on + strand, within Dsui_0383at 383.528 kb on + strand, within Dsui_0383at 383.543 kb on + strand, within Dsui_0383at 383.573 kb on - strand, within Dsui_0383at 383.632 kb on + strand, within Dsui_0383at 383.640 kb on - strand, within Dsui_0383at 383.734 kb on - strand, within Dsui_0383at 383.762 kb on + strand, within Dsui_0383at 383.770 kb on - strand, within Dsui_0383at 383.783 kb on + strand, within Dsui_0383at 383.789 kb on + strand, within Dsui_0383at 383.789 kb on + strand, within Dsui_0383at 383.828 kb on + strandat 383.833 kb on + strandat 383.905 kb on - strandat 383.977 kb on + strandat 384.149 kb on - strand, within Dsui_0384at 384.165 kb on - strand, within Dsui_0384at 384.293 kb on - strand, within Dsui_0384at 384.299 kb on + strand, within Dsui_0384at 384.363 kb on + strandat 384.640 kb on + strand, within Dsui_0384at 384.823 kb on + strand, within Dsui_0384at 384.858 kb on - strand, within Dsui_0384

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Per-strain Table

Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate
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382,417 - +0.5
382,485 + +0.5
382,493 - -0.4
382,584 - +1.1
382,607 - +1.0
382,613 + +0.7
382,642 - +1.0
382,720 - Dsui_0382 0.22 +1.1
382,725 - Dsui_0382 0.23 +0.3
382,745 + Dsui_0382 0.26 +0.6
382,906 + Dsui_0382 0.50 -0.3
382,914 - Dsui_0382 0.52 +0.7
382,958 + Dsui_0382 0.58 +0.8
382,965 + Dsui_0382 0.59 +1.1
383,032 - Dsui_0382 0.70 -2.2
383,032 - Dsui_0382 0.70 +0.8
383,139 - Dsui_0382 0.86 +1.3
383,175 + -0.6
383,175 + -0.2
383,183 - +0.0
383,183 - +1.2
383,238 - +1.3
383,271 - +0.5
383,281 - -0.5
383,321 - -2.5
383,350 + +0.7
383,354 - -1.4
383,358 - -0.4
383,413 - -3.6
383,432 - Dsui_0383 0.16 -3.3
383,440 + Dsui_0383 0.17 -2.4
383,528 + Dsui_0383 0.34 -3.6
383,543 + Dsui_0383 0.37 -1.5
383,573 - Dsui_0383 0.43 -3.6
383,632 + Dsui_0383 0.55 +1.7
383,640 - Dsui_0383 0.56 +1.7
383,734 - Dsui_0383 0.74 +1.0
383,762 + Dsui_0383 0.80 -0.7
383,770 - Dsui_0383 0.81 +0.5
383,783 + Dsui_0383 0.84 -0.2
383,789 + Dsui_0383 0.85 -1.3
383,789 + Dsui_0383 0.85 +1.0
383,828 + +0.7
383,833 + +0.5
383,905 - +1.1
383,977 + +2.7
384,149 - Dsui_0384 0.14 +0.7
384,165 - Dsui_0384 0.15 +0.8
384,293 - Dsui_0384 0.24 +0.7
384,299 + Dsui_0384 0.25 +0.4
384,363 + -1.2
384,640 + Dsui_0384 0.50 +0.1
384,823 + Dsui_0384 0.64 +0.3
384,858 - Dsui_0384 0.66 -1.2

Or see this region's nucleotide sequence