Experiment: No stressor control+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0020 and Dsui_0021 overlap by 8 nucleotides Dsui_0021 and Dsui_0022 are separated by 109 nucleotides Dsui_0022 and Dsui_0023 are separated by 245 nucleotides
Dsui_0020: Dsui_0020 - HAD-superfamily subfamily IIA hydrolase, TIGR01458, at 18,267 to 19,067
_0020
Dsui_0021: Dsui_0021 - putative metalloendopeptidase, at 19,060 to 19,293
_0021
Dsui_0022: Dsui_0022 - hypothetical protein, at 19,403 to 20,341
_0022
Dsui_0023: Dsui_0023 - acetylornithine/succinylornithine aminotransferase, at 20,587 to 21,777
_0023
Position (kb) 19
20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 18.507 kb on + strand at 18.515 kb on - strand, within Dsui_0020 at 18.527 kb on + strand, within Dsui_0020 at 18.580 kb on - strand, within Dsui_0020 at 18.580 kb on - strand, within Dsui_0020 at 18.633 kb on + strand, within Dsui_0020 at 18.727 kb on + strand, within Dsui_0020 at 18.845 kb on + strand, within Dsui_0020 at 18.881 kb on - strand, within Dsui_0020 at 18.939 kb on + strand at 18.947 kb on - strand, within Dsui_0020 at 18.950 kb on + strand at 18.988 kb on + strand at 18.988 kb on + strand at 19.032 kb on + strand at 19.059 kb on - strand at 19.095 kb on + strand, within Dsui_0021 at 19.102 kb on - strand, within Dsui_0021 at 19.286 kb on - strand at 19.296 kb on - strand at 19.301 kb on - strand at 19.343 kb on + strand at 19.353 kb on - strand at 19.368 kb on + strand at 19.434 kb on - strand at 19.434 kb on - strand at 19.434 kb on - strand at 19.531 kb on + strand, within Dsui_0022 at 19.584 kb on + strand, within Dsui_0022 at 19.592 kb on - strand at 19.700 kb on + strand, within Dsui_0022 at 19.702 kb on - strand, within Dsui_0022 at 19.723 kb on + strand, within Dsui_0022 at 19.775 kb on - strand at 19.818 kb on + strand, within Dsui_0022 at 19.897 kb on + strand, within Dsui_0022 at 19.905 kb on - strand, within Dsui_0022 at 19.981 kb on + strand, within Dsui_0022 at 20.059 kb on - strand at 20.086 kb on - strand, within Dsui_0022 at 20.105 kb on - strand, within Dsui_0022 at 20.145 kb on - strand, within Dsui_0022 at 20.177 kb on - strand at 20.293 kb on - strand at 20.316 kb on + strand at 20.324 kb on - strand at 20.383 kb on + strand at 20.528 kb on + strand at 20.529 kb on - strand at 20.540 kb on + strand at 20.603 kb on + strand at 20.628 kb on + strand at 20.705 kb on - strand at 20.719 kb on + strand, within Dsui_0023 at 20.736 kb on + strand, within Dsui_0023 at 20.799 kb on + strand, within Dsui_0023 at 20.921 kb on + strand, within Dsui_0023 at 20.974 kb on + strand, within Dsui_0023 at 21.010 kb on - strand, within Dsui_0023 at 21.079 kb on + strand at 21.181 kb on - strand at 21.186 kb on - strand at 21.221 kb on + strand at 21.227 kb on + strand, within Dsui_0023 at 21.286 kb on - strand, within Dsui_0023
Per-strain Table
Position Strand Gene LocusTag Fraction No stressor control+ 10 mM ClO4 and 20 mM lactate remove 18,507 + +0.5 18,515 - Dsui_0020 0.31 -2.6 18,527 + Dsui_0020 0.32 -0.1 18,580 - Dsui_0020 0.39 +3.5 18,580 - Dsui_0020 0.39 +1.1 18,633 + Dsui_0020 0.46 +0.2 18,727 + Dsui_0020 0.57 +1.3 18,845 + Dsui_0020 0.72 +0.1 18,881 - Dsui_0020 0.77 +1.4 18,939 + +2.0 18,947 - Dsui_0020 0.85 +0.7 18,950 + -0.6 18,988 + -2.3 18,988 + +0.7 19,032 + -3.1 19,059 - +1.5 19,095 + Dsui_0021 0.15 -0.0 19,102 - Dsui_0021 0.18 +0.8 19,286 - +1.2 19,296 - +0.1 19,301 - +0.8 19,343 + +1.1 19,353 - -1.1 19,368 + +0.8 19,434 - +0.6 19,434 - -0.0 19,434 - -0.6 19,531 + Dsui_0022 0.14 +1.3 19,584 + Dsui_0022 0.19 +0.7 19,592 - +0.7 19,700 + Dsui_0022 0.32 +1.8 19,702 - Dsui_0022 0.32 -0.0 19,723 + Dsui_0022 0.34 +1.2 19,775 - -1.7 19,818 + Dsui_0022 0.44 +0.4 19,897 + Dsui_0022 0.53 +2.2 19,905 - Dsui_0022 0.53 +0.5 19,981 + Dsui_0022 0.62 +0.6 20,059 - +0.2 20,086 - Dsui_0022 0.73 +0.3 20,105 - Dsui_0022 0.75 +0.2 20,145 - Dsui_0022 0.79 +1.6 20,177 - -0.2 20,293 - -0.3 20,316 + +0.7 20,324 - -2.4 20,383 + +1.5 20,528 + +1.5 20,529 - +0.7 20,540 + +1.2 20,603 + -2.2 20,628 + -4.5 20,705 - +0.8 20,719 + Dsui_0023 0.11 +0.2 20,736 + Dsui_0023 0.13 -0.3 20,799 + Dsui_0023 0.18 +0.5 20,921 + Dsui_0023 0.28 +0.5 20,974 + Dsui_0023 0.32 +0.9 21,010 - Dsui_0023 0.36 -0.1 21,079 + -0.4 21,181 - +1.0 21,186 - -2.9 21,221 + -0.5 21,227 + Dsui_0023 0.54 +0.1 21,286 - Dsui_0023 0.59 +0.7
Or see this region's nucleotide sequence